View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7632_low_1 (Length: 522)
Name: NF7632_low_1
Description: NF7632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7632_low_1 |
 | |
|
| [»] scaffold1738 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 22)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 10 - 510
Target Start/End: Complemental strand, 8404123 - 8403626
Alignment:
| Q |
10 |
aagaatattactggattgaacaataagatggagattaataatgagagcaataatgggtggaatttggaattggaagatgaaatgaatgaggtaattgaag |
109 |
Q |
| |
|
||||| || ||| ||| ||||| |||||||||||||||| ||| | |||||||| ||||||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
8404123 |
aagaaaatgactagatagaacagtaagatggagattaat---gaggggaataatggatggaatttggagttggaaaatgaaatgaaggaggtaattgaag |
8404027 |
T |
|
| Q |
110 |
tggtgaagagaaaagatattgaggattatgagagattagggaatattgcatcaaagattaacaagggtttagcaatttttggacctttgttaacaggaat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
8404026 |
tggtgaagagaaaagatattgaggattatgagagattagggaatattgcattaaagattaacaagagtttagcaattttaggacctttgttaacaggaat |
8403927 |
T |
|
| Q |
210 |
tgcagctataggatcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat |
309 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8403926 |
tgcagctatagggtcatcatttgtaggtgatgaaatgttggtaaattttgttcctgctttttccggtgctttggcaactgttgttaatacttttgagcat |
8403827 |
T |
|
| Q |
310 |
ggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
8403826 |
ggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaagaaattattgaagagaaagatt |
8403727 |
T |
|
| Q |
410 |
tgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgt |
509 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8403726 |
tgaataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatgcagatgagagagcttgcctcaaaatctgatgt |
8403627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 315 - 505
Target Start/End: Complemental strand, 8429676 - 8429486
Alignment:
| Q |
315 |
acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaat |
414 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
8429676 |
acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaat |
8429577 |
T |
|
| Q |
415 |
aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctg |
505 |
Q |
| |
|
||||||||||| || || |||||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
8429576 |
aaaagagaaaacggggaagtgtttgaaatgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctg |
8429486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 503
Target Start/End: Original strand, 8376193 - 8376297
Alignment:
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
498 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||||||| |
|
|
| T |
8376193 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctca |
8376292 |
T |
|
| Q |
499 |
aaatc |
503 |
Q |
| |
|
||||| |
|
|
| T |
8376293 |
aaatc |
8376297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
| Q |
280 |
ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
359 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
8368183 |
ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
8368104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
| Q |
280 |
ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
359 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
8401227 |
ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
8401306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
| Q |
280 |
ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt |
359 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||| ||||||||||| |
|
|
| T |
8422804 |
ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt |
8422883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
| Q |
291 |
tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
345 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
8411921 |
tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8411867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
| Q |
291 |
tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
345 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
8434019 |
tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8433965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
| Q |
293 |
ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
345 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
8376087 |
ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8376139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 503
Target Start/End: Original strand, 8395879 - 8395983
Alignment:
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
498 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
|
|
| T |
8395879 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca |
8395978 |
T |
|
| Q |
499 |
aaatc |
503 |
Q |
| |
|
||||| |
|
|
| T |
8395979 |
aaatc |
8395983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 8405693 - 8405589
Alignment:
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
498 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
|
|
| T |
8405693 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatca |
8405594 |
T |
|
| Q |
499 |
aaatc |
503 |
Q |
| |
|
||||| |
|
|
| T |
8405593 |
aaatc |
8405589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
| Q |
293 |
ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
345 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
8431070 |
ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8431018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 8430964 - 8430889
Alignment:
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta |
474 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||||||| || ||||||||||||| ||||||| |
|
|
| T |
8430964 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgta |
8430889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
| Q |
277 |
gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag |
336 |
Q |
| |
|
|||||||||||||||||||| || || || |||||||| |||||||||||||| |||||| |
|
|
| T |
8459649 |
gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag |
8459708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
| Q |
292 |
gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta |
341 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |
|
|
| T |
8417001 |
gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta |
8416952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 8411813 - 8411709
Alignment:
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
498 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||| || || |||| ||||||||||||||| | ||| |||| || ||||||||| |
|
|
| T |
8411813 |
agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca |
8411714 |
T |
|
| Q |
499 |
aaatc |
503 |
Q |
| |
|
||||| |
|
|
| T |
8411713 |
aaatc |
8411709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 8433911 - 8433807
Alignment:
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
498 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||| || || |||| ||||||||||||||| | ||| |||| || ||||||||| |
|
|
| T |
8433911 |
agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca |
8433812 |
T |
|
| Q |
499 |
aaatc |
503 |
Q |
| |
|
||||| |
|
|
| T |
8433811 |
aaatc |
8433807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 8416897 - 8416822
Alignment:
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta |
474 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||| |||| |
|
|
| T |
8416897 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgta |
8416822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
| Q |
295 |
aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga |
345 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
8405797 |
aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga |
8405747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 8368350 - 8368314
Alignment:
| Q |
113 |
tgaagagaaaagatattgaggattatgagagattagg |
149 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |
|
|
| T |
8368350 |
tgaagagaaaagatatggaagattatgagagattagg |
8368314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 8401060 - 8401096
Alignment:
| Q |
113 |
tgaagagaaaagatattgaggattatgagagattagg |
149 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |
|
|
| T |
8401060 |
tgaagagaaaagatatggaagattatgagagattagg |
8401096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 8422637 - 8422673
Alignment:
| Q |
113 |
tgaagagaaaagatattgaggattatgagagattagg |
149 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |
|
|
| T |
8422637 |
tgaagagaaaagatatggaagattatgagagattagg |
8422673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 300 - 473
Target Start/End: Complemental strand, 55336151 - 55335978
Alignment:
| Q |
300 |
ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaa |
399 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || | ||||| ||||| || |||| |
|
|
| T |
55336151 |
ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgag |
55336052 |
T |
|
| Q |
400 |
gagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgt |
473 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| | ||||| ||||| || |||||| || ||||||||||| |
|
|
| T |
55336051 |
gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgt |
55335978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 503
Target Start/End: Complemental strand, 55330720 - 55330516
Alignment:
| Q |
299 |
cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattga |
398 |
Q |
| |
|
||||||| ||||| |||||| |||||||||| ||||| ||||||||||| ||||||||||| || |||| ||||||||||| ||||| |||| | || |
|
|
| T |
55330720 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga |
55330621 |
T |
|
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
498 |
Q |
| |
|
|||||||||||| | | ||||||||||| ||| | ||||| ||||| || || ||| |||||||||| ||| ||||||||||||||||| ||| |
|
|
| T |
55330620 |
agagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttca |
55330521 |
T |
|
| Q |
499 |
aaatc |
503 |
Q |
| |
|
||||| |
|
|
| T |
55330520 |
aaatc |
55330516 |
T |
|
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Target: scaffold1738 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 503
Target Start/End: Original strand, 25 - 129
Alignment:
| Q |
399 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
498 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
|
|
| T |
25 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca |
124 |
T |
|
| Q |
499 |
aaatc |
503 |
Q |
| |
|
||||| |
|
|
| T |
125 |
aaatc |
129 |
T |
|
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