View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7632_low_3 (Length: 323)
Name: NF7632_low_3
Description: NF7632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7632_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 8315212 - 8315083
Alignment:
| Q |
186 |
ttttgaaccacctcctttgcatccaacctttttactagagtttctagttgaatgctaagagtgtttagcatgtttttaatcatt-----tgttgtctcat |
280 |
Q |
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| T |
8315212 |
ttttgaaccacctcctttgcatccaacctttttactagagtttctagttgaatgctaagagtgtttaacatgtttttaatcatttgtaatgttgtctcat |
8315113 |
T |
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| Q |
281 |
gttaatgtgctgtgttctctatcgtttggt |
310 |
Q |
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| T |
8315112 |
gttaatgtgttgtgttctctatcgtttggt |
8315083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 8320267 - 8320200
Alignment:
| Q |
80 |
ttgtggaggttagctagcgttgttgcttttgtaggagaaatttggatgatctgctcaaccatggttat |
147 |
Q |
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| T |
8320267 |
ttgtggaggttagctagcgttgttgcatttgtaggagaaatttggatgatctgctcaaccatggttat |
8320200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 8320305 - 8320265
Alignment:
| Q |
16 |
atcatcacttttaggctcagtacccttgattgttgctattg |
56 |
Q |
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| T |
8320305 |
atcatcacttttaggctcagtacccttgattattgctattg |
8320265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 28311801 - 28311913
Alignment:
| Q |
73 |
gattagcttgtggaggttagctagcgttgttgcttttgtaggagaaatttggatgatctgctcaaccatggttataagtgttggaataaggatttctctg |
172 |
Q |
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| T |
28311801 |
gattagcttgtggaggttggagggcgttgttacttttgtaggaaaaattcagatgatctgttcaaccagggttataagtattagaatacgtatttctctg |
28311900 |
T |
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| Q |
173 |
ctgcctggtaaag |
185 |
Q |
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| T |
28311901 |
ctccctgataaag |
28311913 |
T |
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