View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7633_high_2 (Length: 410)
Name: NF7633_high_2
Description: NF7633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7633_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 392
Target Start/End: Original strand, 37495658 - 37496040
Alignment:
| Q |
9 |
ggtggttggtacagacatgttaaagcattcaacaagttagtatttagaaatttagatgaaaaataagatatagaaaaggttttgcatttggaaattgcag |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37495658 |
ggtggttggtacagacatgttaaagcattcaacaagttagtatttagaaatttagatgaaaaataagatatagaaaaggttttgcatttagaaattgcag |
37495757 |
T |
|
| Q |
109 |
aataagagatttcttgtatacaaagatattgcatttagttatatatagtaagtaaaagaggtactactctagtcacaaatattagcagaaaagaagacat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37495758 |
aataagagatttcttgtatacaaagatattgcatttagttatatatagtaagtaaaagaggtactactctagtcacaaatattagcagacaagaagacat |
37495857 |
T |
|
| Q |
209 |
atttgatggtctaaagtattagtaaaatcttaacaaatttgaccttactcaatgctactattctcaaataaccttcaataaaacaagtttccatacaaaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37495858 |
atttgatggtctaaagtattagtaaaatcttaacaaatttgaccttactcaatgctactattctcaaataaccttcaataaaacaag-ttccatacaaaa |
37495956 |
T |
|
| Q |
309 |
ttaactgaaaagaaacggtatggttctggatatgtcattannnnnnnattacatcaagaaaattaaacaaatcaaaccccggtt |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37495957 |
ttaactgaaaagaaacggtatggttctggatatgtcattattttttgattacatcaagaaaattaaacaaatcaaaccccggtt |
37496040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 26009010 - 26008968
Alignment:
| Q |
280 |
ccttcaataaaacaagtttccatacaaaattaactgaaaagaa |
322 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
26009010 |
ccttcaataaaacaagttctcatacaaaattaaatgaaaagaa |
26008968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 49452124 - 49452077
Alignment:
| Q |
281 |
cttcaataaaacaagtttccatacaaaattaactgaaaagaaacggta |
328 |
Q |
| |
|
||||||| | |||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
49452124 |
cttcaatgacacaagtttccatacaaaattaaatgaaaagaaagggta |
49452077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University