View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7633_low_4 (Length: 395)
Name: NF7633_low_4
Description: NF7633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7633_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 15742897 - 15743261
Alignment:
| Q |
17 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagggatggagaactttgnnnnnnngaagagtcgc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
15742897 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcttcggaaaaggttgttgatgcagaaatggagaactttgaaacaaagaagagtcgc |
15742996 |
T |
|
| Q |
117 |
aaggataatagaattgggggaagagtattgaacgagaaagggatagatgaagaaacgaaagcaagaagaaaatcttacatgacagttagaaaaagagagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15742997 |
aaggataatagaattgggggaagagtattgaacgagaaagggacaaatgaagaaacaaaagcaagaagaaaatcttacatgacaattagaaaaagagagc |
15743096 |
T |
|
| Q |
217 |
aagagggtggggtctacccacaaccaccgccggagccattctcgctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15743097 |
aagagggtggggtctacccacaaccaccgccggagccattccctctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
15743196 |
T |
|
| Q |
317 |
tgaaggggacttgttagggttccaacaatgggatcctggggggaaaagaattcaagttagtttct |
381 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15743197 |
tgaagggggcttgtcagggttccaacaatgggatcctgggggcaaaagaattcaagttagtttct |
15743261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 28876156 - 28876520
Alignment:
| Q |
17 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagggatggagaactttgnnnnnnngaagagtcgc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
28876156 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcttcggaaaaggttgttgatgcagaaatggagaactttgaaacaaagaagagtcgc |
28876255 |
T |
|
| Q |
117 |
aaggataatagaattgggggaagagtattgaacgagaaagggatagatgaagaaacgaaagcaagaagaaaatcttacatgacagttagaaaaagagagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28876256 |
aaggataatagaattgggggaagagtattgaacgagaaagggacaaatgaagaaacaaaagcaagaagaaaatcttacatgacaattagaaaaagagagc |
28876355 |
T |
|
| Q |
217 |
aagagggtggggtctacccacaaccaccgccggagccattctcgctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28876356 |
aagagggtggggtctacccacaaccaccgccggagccattccctctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
28876455 |
T |
|
| Q |
317 |
tgaaggggacttgttagggttccaacaatgggatcctggggggaaaagaattcaagttagtttct |
381 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28876456 |
tgaagggggcttgtcagggttccaacaatgggatcctgggggcaaaagaattcaagttagtttct |
28876520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 51837129 - 51837493
Alignment:
| Q |
17 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagggatggagaactttgnnnnnnngaagagtcgc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
51837129 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcttcggaaaaggttgttgatgcagaaatggagaactttgaaacaaagaagagtcgc |
51837228 |
T |
|
| Q |
117 |
aaggataatagaattgggggaagagtattgaacgagaaagggatagatgaagaaacgaaagcaagaagaaaatcttacatgacagttagaaaaagagagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51837229 |
aaggataatagaattgggggaagagtattgaacgagaaagggacagatgaagaaagaaaagcaagaagaaaatcttacatgacaattagaaaaagagagc |
51837328 |
T |
|
| Q |
217 |
aagagggtggggtctacccacaaccaccgccggagccattctcgctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51837329 |
aagagggtggggtctacccacaaccaccgccggagccattccctctaaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
51837428 |
T |
|
| Q |
317 |
tgaaggggacttgttagggttccaacaatgggatcctggggggaaaagaattcaagttagtttct |
381 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51837429 |
tgaagggggcttgtcagggttccaacaatgggatcctgggggcaaaagaattcaagttagtttct |
51837493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 1573479 - 1573115
Alignment:
| Q |
17 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagggatggagaactttgnnnnnnngaagagtcgc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
1573479 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcttcggaaaaggttgttgatgcagaaatggagaactttgaaacaaagaagagtcgc |
1573380 |
T |
|
| Q |
117 |
aaggataatagaattgggggaagagtattgaacgagaaagggatagatgaagaaacgaaagcaagaagaaaatcttacatgacagttagaaaaagagagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1573379 |
aaggataatagaattgggggaagagtattgaacgagaaagggacaaatgaagaaacaaaagcaagaagaaaatcttacatgacaattagaaaaagagagc |
1573280 |
T |
|
| Q |
217 |
aagagggtggggtctacccacaaccaccgccggagccattctcgctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1573279 |
aagagggtggggtctacccacaaccaccgccggagccattccctctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
1573180 |
T |
|
| Q |
317 |
tgaaggggacttgttagggttccaacaatgggatcctggggggaaaagaattcaagttagtttct |
381 |
Q |
| |
|
|||||| | ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1573179 |
tgaaggaggcttgtcagggttccaacaatgggatcctgggggcaaaagaattcaagttagtttct |
1573115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 30575303 - 30574939
Alignment:
| Q |
17 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagggatggagaactttgnnnnnnngaagagtcgc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
30575303 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcaaaaatggagaactttgaaacaaagaagagtcgc |
30575204 |
T |
|
| Q |
117 |
aaggataatagaattgggggaagagtattgaacgagaaagggatagatgaagaaacgaaagcaagaagaaaatcttacatgacagttagaaaaagagagc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30575203 |
aaggataatagaattgggggaagagtattgaacgagaaagggacagatgaagaaacaaaagcaagaagaaaatcttacatgacaattagaaaaagagagc |
30575104 |
T |
|
| Q |
217 |
aagagggtggggtctacccacaaccaccgccggagccattctcgctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30575103 |
aagagggtggggtctacccacaaccatcgccggagccattccctttgaatttgaaagaaaggatttgcaaatataaaactttgtatgtggcttggttgtt |
30575004 |
T |
|
| Q |
317 |
tgaaggggacttgttagggttccaacaatgggatcctggggggaaaagaattcaagttagtttct |
381 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30575003 |
tgaagggggcttgttagggttccaacaatgggatcctgggggcaaaagaattcaagttagtttct |
30574939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 162 - 381
Target Start/End: Complemental strand, 6529585 - 6529366
Alignment:
| Q |
162 |
gatgaagaaacgaaagcaagaagaaaatcttacatgacagttagaaaaagagagcaagagggtggggtctacccacaaccaccgccggagccattctcgc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6529585 |
gatgaagaaacgaaagcaagaagaaaatcttacatgacagttagaaaaagagagcaagagggtggggtctacccacaaccaccgccgaagccattctcgc |
6529486 |
T |
|
| Q |
262 |
tgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtttgaaggggacttgttagggttccaacaatgggatcctggggggaa |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |
|
|
| T |
6529485 |
tgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtttgaagggggcttgtcagggttccaacaatgggatcctgggggcaa |
6529386 |
T |
|
| Q |
362 |
aagaattcaagttagtttct |
381 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6529385 |
aagaattcaagttagtttct |
6529366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 30100969 - 30101332
Alignment:
| Q |
17 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagggatggagaactttgnnnnnnngaagagtcgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
30100969 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagaaatggagaactttgaaacaaagaagagtcgc |
30101068 |
T |
|
| Q |
117 |
aaggataatagaattgggggaagagtattgaacgagaaagggatagatgaagaaacgaaagcaagaagaaaatcttacatgacagttagaaaaagagagc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
30101069 |
aaggataatagaattgggggaagagtattgaatgagaaagg-acagatgaagaaacaaaagcaagaagaaaatcttacatgacaattagaaaaggagagc |
30101167 |
T |
|
| Q |
217 |
aagagggtggggtctacccacaaccaccgccggagccattctcgctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30101168 |
aagagggtggggtctacccacaaccaccgccggagccattccctctgaatttgaaagaaaggagttgcaaatataaaactttgtatgtggcttggttgtt |
30101267 |
T |
|
| Q |
317 |
tgaaggggacttgttagggttccaacaatgggatcctggggggaaaagaattcaagttagtttct |
381 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30101268 |
tgaagggggcttgtcagggttccaacaatgggatcctgggggcaaaagaattcaagttagtttct |
30101332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 41423009 - 41423130
Alignment:
| Q |
17 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagggatggagaactttgnnnnnnngaagagtcgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
41423009 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagaaatggagaactttgaaacaaagaagagtcgc |
41423108 |
T |
|
| Q |
117 |
aaggataatagaattgggggaa |
138 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41423109 |
aaggataatagaattgggggaa |
41423130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 13046952 - 13047029
Alignment:
| Q |
17 |
catcaacgatggagaaggaaggtacgtcaatgaaatttcaccttcgtcggaaaaggttgttgatgcagggatggagaa |
94 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||| |||||||| |
|
|
| T |
13046952 |
catcaacgatggagaaggaaggtacatcaacgaaatttcaccttcgtcggaaaagatcattgatgcagaaatggagaa |
13047029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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