View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7633_low_5 (Length: 366)

Name: NF7633_low_5
Description: NF7633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7633_low_5
NF7633_low_5
[»] chr2 (2 HSPs)
chr2 (1-347)||(42090004-42090350)
chr2 (133-271)||(3680091-3680229)
[»] chr4 (4 HSPs)
chr4 (31-172)||(54149917-54150058)
chr4 (92-172)||(25312071-25312151)
chr4 (182-248)||(26426822-26426888)
chr4 (175-239)||(16492287-16492352)
[»] chr1 (2 HSPs)
chr1 (31-172)||(47122817-47122958)
chr1 (31-172)||(50405564-50405705)
[»] chr3 (2 HSPs)
chr3 (133-222)||(14653604-14653693)
chr3 (92-172)||(42475103-42475183)
[»] chr8 (1 HSPs)
chr8 (169-222)||(40792802-40792855)
[»] chr6 (1 HSPs)
chr6 (168-215)||(26275220-26275267)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 42090004 - 42090350
Alignment:
Q  1 aaacaccgccgaagatgcagagtaaattatgaaatgttgagatagagaataaaaactgaaatgcgatgtcaaagaggggaaaaggaataaaaacgagata 100  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42090004 aaacaccagcgaagatgcagagtaaattatgaaatgctgagatagagaataaaaactgaaatgcgatgtcaaagaggggaaaaggaataaaaacgagatc 42090103  T
Q  101 gatctgaggtcaaaagaggaagtaaatgagcattttaactgccaatctacagtaaagaagaattgattttggagaagttaggatttggagcttcacatag 200  Q
    ||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  42090104 gatctgagggcaaaaaagaaagtaaatgagctttttaactgccaatctacagtaaagaagaattgattttggagaagctaggatttggagcttctcatag 42090203  T
Q  201 aattgattttggaaggctgaatcaattttaaaaatgaaaatcaaacatattgcaaaactgataaaatcacgttaaggtctgaaaacgcacatttaagagt 300  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  42090204 aattgattttggaaggctcaatcaattttaaaaatgaaaaccaaacatattgcaaaactgataaaatcacgttaaggtttgaaaacgcaagtttaagagt 42090303  T
Q  301 tgcaaaagctaaaccaaacatgcacttaatctcattcattcctttta 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42090304 tgcaaaagctaaaccaaacatgcacttaatctcattcattcctttta 42090350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 3680229 - 3680091
Alignment:
Q  133 ttttaactgccaatctacagtaaa-gaagaattgattttggagaagttaggatttggagcttcacatagaattgattttggaaggctgaatcaattttaa 231  Q
    ||||||||||||| | ||||||||   | |||||| |||||||||| |||||||||||||||| | || ||||| ||||||||  || |||  |||| |     
T  3680229 ttttaactgccaaccaacagtaaacttataattga-tttggagaagctaggatttggagcttctcctataattgcttttggaacactaaattgatttgag 3680131  T
Q  232 aaatgaaaatcaaacatattgcaaaactgataaaatcacg 271  Q
    |||||| | |||||||| ||||||||   |||||||||||    
T  3680130 aaatgatagtcaaacatgttgcaaaaggcataaaatcacg 3680091  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 54150058 - 54149917
Alignment:
Q  31 gaaatgttgagatagagaataaaaactgaaatgcgatgtcaaagaggg-gaaaaggaataaaaacgagatagatctgaggtcaaaagaggaagtaaatga 129  Q
    |||||||||||| |||||||| ||||||||||| | |||  ||||||| || |||||| |||| ||| |||||||||||| ||||  |||||| ||||||    
T  54150058 gaaatgttgagacagagaatagaaactgaaatgggttgttcaagagggagagaaggaagaaaa-cgatatagatctgagggcaaagaaggaaggaaatga 54149960  T
Q  130 gcattttaactgccaatctacagtaaagaagaattgattttgg 172  Q
    |  |||||||||||||| ||||||||| || ||||||||||||    
T  54149959 gttttttaactgccaatgtacagtaaacaaaaattgattttgg 54149917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 25312151 - 25312071
Alignment:
Q  92 aacgagatagatctgaggtcaaaagaggaagtaaatgagcattttaactgccaa-tctacagtaaagaagaattgattttgg 172  Q
    |||||||||||||||||| ||||  |||||| |||||||  ||||||||||||| ||||||||||| || ||||||||||||    
T  25312151 aacgagatagatctgagggcaaagaaggaag-aaatgagttttttaactgccaaatctacagtaaacaaaaattgattttgg 25312071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 26426822 - 26426888
Alignment:
Q  182 gatttggagcttcacatagaattgattttggaaggctgaatcaattttaaaaatgaaaatcaaacat 248  Q
    |||||| |||||| |||||||||||||||||||| |  ||||| ||||| ||| ||||| |||||||    
T  26426822 gatttgtagcttctcatagaattgattttggaagacaaaatcacttttagaaaagaaaaccaaacat 26426888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 16492352 - 16492287
Alignment:
Q  175 aagttaggatttggagcttcacatagaattgattttggaaggctgaatcaattttaa-aaatgaaa 239  Q
    ||||||| || ||||||||| ||||||||||| ||||||||||  |||| ||||||| ||||||||    
T  16492352 aagttagaatatggagcttctcatagaattgagtttggaaggcaaaatcgattttaagaaatgaaa 16492287  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 47122958 - 47122817
Alignment:
Q  31 gaaatgttgagatagagaataaaaactgaaatgcgatgtcaaagaggg-gaaaaggaataaaaacgagatagatctgaggtcaaaagaggaagtaaatga 129  Q
    |||||||||||| |||||||| ||||||||||| | |||  ||||||| || |||||| |||| ||| |||||||||||| ||||  |||||| ||||||    
T  47122958 gaaatgttgagacagagaatagaaactgaaatgggttgttcaagagggagagaaggaagaaaa-cgatatagatctgagggcaaagaaggaaggaaatga 47122860  T
Q  130 gcattttaactgccaatctacagtaaagaagaattgattttgg 172  Q
    |  |||||||||||||| ||||||||| || ||||||||||||    
T  47122859 gttttttaactgccaatgtacagtaaacaaaaattgattttgg 47122817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 172
Target Start/End: Complemental strand, 50405705 - 50405564
Alignment:
Q  31 gaaatgttgagatagagaataaaaactgaaatgcgatgtcaaagaggg-gaaaaggaataaaaacgagatagatctgaggtcaaaagaggaagtaaatga 129  Q
    |||||| ||||| |||||||| ||||||||||| | |||  ||||||| || |||||| |||| ||| |||||||||||| ||||  |||||| ||||||    
T  50405705 gaaatgctgagacagagaatagaaactgaaatgggttgttcaagagggagagaaggaagaaaa-cgatatagatctgagggcaaagaaggaaggaaatga 50405607  T
Q  130 gcattttaactgccaatctacagtaaagaagaattgattttgg 172  Q
    |  |||||||||||||| |||| |||| || ||||||||||||    
T  50405606 gttttttaactgccaatgtacaataaacaaaaattgattttgg 50405564  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 14653604 - 14653693
Alignment:
Q  133 ttttaactgccaatctacagtaaa-gaagaattgattttggagaagttaggatttggagcttcacatagaattgattttggaaggctgaat 222  Q
    ||||||||||||| | |||||||| | ||||||||||| ||||||| |||||||||||||||| | |||||||| ||||||||| ||||||    
T  14653604 ttttaactgccaaccaacagtaaacgtagaattgattt-ggagaagctaggatttggagcttctcctagaattgcttttggaagcctgaat 14653693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 42475183 - 42475103
Alignment:
Q  92 aacgagatagatctgaggtcaaaagaggaagtaaatgagcattttaactgccaa-tctacagtaaagaagaattgattttgg 172  Q
    |||||||||||||||||| ||||  |||||| |||||||  ||||||||||||| ||||||||||| || ||||||||||||    
T  42475183 aacgagatagatctgagggcaaagaaggaag-aaatgagttttttaactgccaaatctacagtaaacaaaaattgattttgg 42475103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 40792802 - 40792855
Alignment:
Q  169 ttggagaagttaggatttggagcttcacatagaattgattttggaaggctgaat 222  Q
    |||||||||||||||||||||||||| | || ||||| ||||||||||||||||    
T  40792802 ttggagaagttaggatttggagcttctcctataattgtttttggaaggctgaat 40792855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 26275220 - 26275267
Alignment:
Q  168 tttggagaagttaggatttggagcttcacatagaattgattttggaag 215  Q
    ||||||||||||||||||||||||||| | || ||||| |||||||||    
T  26275220 tttggagaagttaggatttggagcttctcctaaaattgcttttggaag 26275267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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