View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7633_low_7 (Length: 289)
Name: NF7633_low_7
Description: NF7633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7633_low_7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 5318237 - 5317956
Alignment:
| Q |
8 |
tggacatcaacataaaggaaaagaaccaatggaccgcgaataatttgtacagctgcttagttccactctgattgtaaagtttcctggtgtcattatttgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5318237 |
tggacatcaacataaaggaaaagaaccaatggaccgcgaataatttgtacagctgctttgttccactctgattgtaaagtttcctggtgtcattatttgt |
5318138 |
T |
|
| Q |
108 |
catgtaaataagtaaatgaagatgtagatatcatatcctccactttgaccataattgagtgatggtgacctgtatcaagtttaattttatttcgctacac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5318137 |
catgtaaataagtaaatgaagatgtagatatcatatcctccactttgaccataattgagtgatggtgacctgtatcaagtttaattttatttcgctacac |
5318038 |
T |
|
| Q |
208 |
agtggactaaaatttgcacattatttgatgatttaatgagggtcaaaagttgatcaattgtgttcaaatgaattttgtgttt |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5318037 |
agtggactaaaatttgcacattatttgatgatttaatgagggtcaaaagttgatcaattgtgttcaaatgaattttgtgttt |
5317956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University