View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7634_high_1 (Length: 238)

Name: NF7634_high_1
Description: NF7634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7634_high_1
NF7634_high_1
[»] chr8 (4 HSPs)
chr8 (19-222)||(10283190-10283393)
chr8 (23-222)||(10241563-10241762)
chr8 (19-222)||(10271702-10271905)
chr8 (19-222)||(10263530-10263733)
[»] chr7 (1 HSPs)
chr7 (117-222)||(48369683-48369788)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 10283190 - 10283393
Alignment:
Q  19 atgctcaagaatcttcatgaatgttcctctcctaacaactcggagttcaagggcctcgatagctttggctcttctagaaccaacatatccaatatcagca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10283190 atgctcaagaatcttcatgaatgttcctctcctaacaactcggagttcaagggcttcgatagctttggctcttctagaaccaacatatccaatatcagca 10283289  T
Q  119 aaagtcttgtctaaacagctgcaacactcaccaagcacttcatcgcttgcttcgccattgatttcccaaaagataacatagtgtcctggttgtttggata 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10283290 aaagtcttgtctaaacagctgcaacactcaccaagcacttcatcgcttgcttcgccattgatttcccaaaagataacatagtgtcctggttgtttagata 10283389  T
Q  219 aatc 222  Q
    ||||    
T  10283390 aatc 10283393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 10241563 - 10241762
Alignment:
Q  23 tcaagaatcttcatgaatgttcctctcctaacaactcggagttcaagggcctcgatagctttggctcttctagaaccaacatatccaatatcagcaaaag 122  Q
    ||||||||||||  |||||||||| ||| ||||| |||||||||||||||| | ||| ||||| || ||||||||| |||||| |||  |||| ||||||    
T  10241563 tcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggccgcaatacctttgacttttctagaactaacatagccagcatcaacaaaag 10241662  T
Q  123 tcttgtctaaacagctgcaacactcaccaagcacttcatcgcttgcttcgccattgatttcccaaaagataacatagtgtcctggttgtttggataaatc 222  Q
     ||| || |||||  | ||||| ||||||||||||||||| |||||||| ||| ||||||||||||| |||||||| |||||||||| ||||||||||||    
T  10241663 acttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtcctggttctttggataaatc 10241762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 10271702 - 10271905
Alignment:
Q  19 atgctcaagaatcttcatgaatgttcctctcctaacaactcggagttcaagggcctcgatagctttggctcttctagaaccaacatatccaatatcagca 118  Q
    ||||||||||||||||  |||||||||| | | ||||| |||||||||||||||  | ||  ||||| || | ||||||| |||||| |||| |||| ||    
T  10271702 atgctcaagaatcttctggaatgttccttttcgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagccaagatcaaca 10271801  T
Q  119 aaagtcttgtctaaacagctgcaacactcaccaagcacttcatcgcttgcttcgccattgatttcccaaaagataacatagtgtcctggttgtttggata 218  Q
    |||| |||||| || ||  | ||||| ||| ||||||| ||||| |||||||||||| |||||||||| ||||||||||| |||||||||| ||| ||||    
T  10271802 aaagacttgtccaagcatgtacaacattcatcaagcacatcatcacttgcttcgccactgatttcccagaagataacataatgtcctggttctttcgata 10271901  T
Q  219 aatc 222  Q
    ||||    
T  10271902 aatc 10271905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 10263530 - 10263733
Alignment:
Q  19 atgctcaagaatcttcatgaatgttcctctcctaacaactcggagttcaagggcctcgatagctttggctcttctagaaccaacatatccaatatcagca 118  Q
    ||||||||||||||||  |||||||||| ||| ||||| |||||||||||||||  | ||  ||||| || | ||||||| |||||| |||  |||| ||    
T  10263530 atgctcaagaatcttctggaatgttcctttccgaacaagtcggagttcaagggctccaatgcctttgactttcctagaactaacatagccagcatcaaca 10263629  T
Q  119 aaagtcttgtctaaacagctgcaacactcaccaagcacttcatcgcttgcttcgccattgatttcccaaaagataacatagtgtcctggttgtttggata 218  Q
    |||| ||| || |||||  | ||||| |||  ||||||  |||| |||||||| ||  |||||||||| |||||||||||||||||||| |  |||||||    
T  10263630 aaagacttatccaaacatgtacaacattcataaagcacagcatcacttgcttcaccgctgatttcccagaagataacatagtgtcctgggtcattggata 10263729  T
Q  219 aatc 222  Q
    ||||    
T  10263730 aatc 10263733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 48369788 - 48369683
Alignment:
Q  117 caaaagtcttgtctaaacagctgcaacactcaccaagcacttcatcgcttgcttcgccattgatttcccaaaagataacatagtgtcctggttgtttgga 216  Q
    |||||| |||||| |||||| ||||||| |||  ||||||||| || |||||||| || ||||||||||| ||||| |||||||  ||||| | ||||||    
T  48369788 caaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgcttccccgttgatttcccagaagattacatagttccctggctctttgga 48369689  T
Q  217 taaatc 222  Q
    ||||||    
T  48369688 taaatc 48369683  T

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