View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7634_high_2 (Length: 242)
Name: NF7634_high_2
Description: NF7634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7634_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 33628614 - 33628412
Alignment:
| Q |
30 |
tgaatgatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaat |
129 |
Q |
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| T |
33628614 |
tgaattatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaac |
33628515 |
T |
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| Q |
130 |
aatttttctttcaattttgcatgcaaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttacccctgatga |
229 |
Q |
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| T |
33628514 |
aatttttctttcaattttgcatgcaaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatga |
33628415 |
T |
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| Q |
230 |
tgt |
232 |
Q |
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||| |
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| T |
33628414 |
tgt |
33628412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 33624734 - 33624556
Alignment:
| Q |
2 |
tttaacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaaaactgaatt-ttaaaaaatctagtacaaatataagaaatagt |
100 |
Q |
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| T |
33624734 |
tttaacacaagtgaactcctaacaactatgaattatagatttcatcaaatctaagcaacattgacttctgaaaaaatatagcactaatataagaaatagt |
33624635 |
T |
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| Q |
101 |
acatataatgtttcaaaaaatacatcaata-atttttctttcaattttgcatgcaaacttcatggatgatttccttctccg |
180 |
Q |
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| T |
33624634 |
--atatattttttcaaagaatatatcaacatttttttctttcatgtttgtatacaaacttcatggacgatttccttctccg |
33624556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 33610006 - 33609941
Alignment:
| Q |
153 |
caaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgttt |
218 |
Q |
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| T |
33610006 |
caaacttcatggatgattttcttgacgatcttctcctttaacaaatcgacaccaaaaccaatgttt |
33609941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 12059827 - 12059882
Alignment:
| Q |
4 |
taacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaa |
59 |
Q |
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|||||||||| ||||| |||||||||||||| || ||||| |||||||| |||||| |
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| T |
12059827 |
taacacaagtaaactcgtaacaactatgaattatggatttgatcaaatccaaacaa |
12059882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 12053122 - 12053171
Alignment:
| Q |
4 |
taacacaagtgaactcctaacaactatgaatgataga-ttttatcaaatc |
52 |
Q |
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|||||||||| |||||||||||||||||||| || || |||||||||||| |
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| T |
12053122 |
taacacaagtaaactcctaacaactatgaattatggatttttatcaaatc |
12053171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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