View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7635_high_1 (Length: 605)
Name: NF7635_high_1
Description: NF7635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7635_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 93 - 561
Target Start/End: Original strand, 42898504 - 42898992
Alignment:
| Q |
93 |
tacattgatatatattgatataggagcaggtacctagctagataaaatcaaacatttttgaaagaaagtggaaatttttagaattgaaa---attgaann |
189 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42898504 |
tacattgatatatattgatctaggagcaggtacctagctagataaaatcaaacatttttgaaagaaagtggaaatttttagaattgaaattaattgaatt |
42898603 |
T |
|
| Q |
190 |
nnnnnaatgtactatctctctagttgttagtgcatgcttagattgatggtgaatttatcagaatcatttagaatcacattgtaatatttttgacaaaagt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42898604 |
tttttaatgtactatctctctagttgttagtgcatgcttagattgatggtgaatttatcagaatcatttagaatcacattgtaatatttttgacaaaagt |
42898703 |
T |
|
| Q |
290 |
tatgcttcggagtttcaacaaaatcacgctaacaccggaaaatttacatttatcccaacatgcacttggtactctcaagtctaaggagagtgagacta-- |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42898704 |
tatgcttcggagtttcaacaaaatcacgctaacaccggaaaatttacatttatcccaacatgcacttagtactctcaagtctaaggagagtgagactaaa |
42898803 |
T |
|
| Q |
388 |
-----------aaaaagagagaatgagtgacagtgaatatttcttgactgttatagcattttagtaacagtatttg----tgtttgtttgtttatatatt |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42898804 |
aaaaatgactgaaaaagagagaatgagtgacagtgaatatttcttgactgttatagcattttagtaacagtatttgtgtttgtttgtttgtttatatatt |
42898903 |
T |
|
| Q |
473 |
atatgattttcaggagggacagtttcataactcacagagccttctgtgatgcattagctgaggagagttcaagaaccgtaattcctcaa |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42898904 |
atatgattttcaggagggacagtttcataactcacagagccttctgtgatgcattagctgaggagagttcaagaaccgtaattcctcaa |
42898992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 483 - 527
Target Start/End: Complemental strand, 50786145 - 50786101
Alignment:
| Q |
483 |
caggagggacagtttcataactcacagagccttctgtgatgcatt |
527 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50786145 |
caggagagacagtttcataactcacagagccttctgtgatgcatt |
50786101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 521
Target Start/End: Original strand, 4160895 - 4160929
Alignment:
| Q |
487 |
agggacagtttcataactcacagagccttctgtga |
521 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
4160895 |
agggacagtttcatcactcacagagccttctgtga |
4160929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 546
Target Start/End: Complemental strand, 5788056 - 5787997
Alignment:
| Q |
487 |
agggacagtttcataactcacagagccttctgtgatgcattagctgaggagagttcaaga |
546 |
Q |
| |
|
||||||||||||||||| || ||||| || |||||||||||||| || |||||| ||||| |
|
|
| T |
5788056 |
agggacagtttcataacacatagagcattttgtgatgcattagcagaagagagtgcaaga |
5787997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 530
Target Start/End: Complemental strand, 30517399 - 30517352
Alignment:
| Q |
483 |
caggagggacagtttcataactcacagagccttctgtgatgcattagc |
530 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||||| ||||| |
|
|
| T |
30517399 |
caggagagacagcttcataactcacagagccttttgtgatgccttagc |
30517352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 533
Target Start/End: Complemental strand, 44150203 - 44150153
Alignment:
| Q |
483 |
caggagggacagtttcataactcacagagccttctgtgatgcattagctga |
533 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
44150203 |
caggagagacagttttataacccacagagcattctgtgatgcattaactga |
44150153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University