View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7635_low_4 (Length: 250)
Name: NF7635_low_4
Description: NF7635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7635_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 3331968 - 3332200
Alignment:
| Q |
18 |
agaaccatcatcttcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaagcaatcaaagcaccaaca |
117 |
Q |
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| T |
3331968 |
agaaccatcatcatcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaagcaatcaaagcaccaaca |
3332067 |
T |
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| Q |
118 |
acacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagcg |
217 |
Q |
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| T |
3332068 |
acacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaagaaacgatccagccagcg |
3332167 |
T |
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| Q |
218 |
aaagaatctcgaaccttccatgaagtgtaacaa |
250 |
Q |
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| T |
3332168 |
aaagaatctcgaaccttccatgaagtgtaacaa |
3332200 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 39960017 - 39959944
Alignment:
| Q |
85 |
acaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaata |
158 |
Q |
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| T |
39960017 |
acaacaggtcctgaagcaatcaaagcaccaactacagcacctccaacaacttgtccttgagcacccgctaaata |
39959944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 16579014 - 16578946
Alignment:
| Q |
87 |
aacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaa |
155 |
Q |
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| T |
16579014 |
aacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaa |
16578946 |
T |
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