View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_1 (Length: 1315)

Name: NF7636_high_1
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_1
NF7636_high_1
[»] chr5 (9 HSPs)
chr5 (870-1300)||(4286711-4287137)
chr5 (454-798)||(4287222-4287567)
chr5 (188-412)||(8123455-8123679)
chr5 (199-412)||(671389-671602)
chr5 (188-316)||(41709523-41709651)
chr5 (75-162)||(4287571-4287658)
chr5 (189-339)||(24108697-24108848)
chr5 (23-75)||(4291072-4291124)
chr5 (189-269)||(10321869-10321949)
[»] chr7 (12 HSPs)
chr7 (189-412)||(42513062-42513285)
chr7 (189-339)||(30456307-30456456)
chr7 (265-412)||(38572287-38572434)
chr7 (189-339)||(30452702-30452847)
chr7 (199-311)||(11206499-11206611)
chr7 (188-368)||(41712265-41712443)
chr7 (200-364)||(49017102-49017266)
chr7 (556-640)||(19990230-19990314)
chr7 (199-313)||(6102928-6103043)
chr7 (1093-1147)||(19972170-19972224)
chr7 (1046-1107)||(19972245-19972306)
chr7 (418-451)||(38572462-38572495)
[»] chr3 (10 HSPs)
chr3 (189-389)||(36326442-36326640)
chr3 (250-412)||(30911982-30912144)
chr3 (238-410)||(55211737-55211905)
chr3 (199-285)||(14029381-14029467)
chr3 (258-412)||(32414663-32414821)
chr3 (236-325)||(33328218-33328306)
chr3 (189-228)||(30912146-30912185)
chr3 (28-62)||(21224810-21224844)
chr3 (203-245)||(32414847-32414889)
chr3 (418-451)||(30911921-30911954)
[»] chr6 (7 HSPs)
chr6 (187-412)||(4834644-4834871)
chr6 (189-412)||(7415566-7415789)
chr6 (189-396)||(7422590-7422797)
chr6 (189-409)||(7426516-7426736)
chr6 (189-412)||(33242776-33242998)
chr6 (189-291)||(13886589-13886691)
chr6 (342-412)||(13886515-13886585)
[»] chr1 (6 HSPs)
chr1 (189-412)||(18583886-18584109)
chr1 (189-339)||(23405475-23405625)
chr1 (189-279)||(21075941-21076031)
chr1 (349-412)||(13087634-13087696)
chr1 (199-279)||(9893803-9893883)
chr1 (199-316)||(13087701-13087817)
[»] chr8 (2 HSPs)
chr8 (189-330)||(44761976-44762117)
chr8 (189-330)||(44765283-44765424)
[»] chr4 (8 HSPs)
chr4 (189-339)||(27387620-27387770)
chr4 (189-321)||(55322334-55322467)
chr4 (299-412)||(20441029-20441141)
chr4 (189-330)||(36050673-36050813)
chr4 (189-330)||(36053932-36054072)
chr4 (199-313)||(24733642-24733756)
chr4 (416-451)||(36050519-36050554)
chr4 (416-451)||(36053778-36053813)
[»] chr2 (5 HSPs)
chr2 (297-412)||(31211616-31211731)
chr2 (189-293)||(31211859-31211963)
chr2 (205-339)||(45327420-45327554)
chr2 (199-272)||(31193244-31193317)
chr2 (189-226)||(40400909-40400946)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 870 - 1300
Target Start/End: Complemental strand, 4287137 - 4286711
Alignment:
Q  870 gctctgatatctattagttattgttgatttgaaatatgtcatgcatcttgatgctctaatgatcaaatctatcactctgacctggatgacataaattggt 969  Q
    |||||||||||||||||||| |||||||||||||||||||||    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4287137 gctctgatatctattagttagtgttgatttgaaatatgtcat----cttgatgctctaatgatcaaatctatcactctgaactggatgacataaattggt 4287042  T
Q  970 ttgaactttgaatattagttagtgttgtttggatatgtttgctctaatgtttgtaactgaagcttcttaaaatatatatactttcttcatgctttcatca 1069  Q
    |||||||| |||||||||||||||||  ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  4287041 ttgaacttcgaatattagttagtgtttcttggatatgtttgctctaaagtttgtaattgaagcttcttataatatatatactttcttcatgctttcatca 4286942  T
Q  1070 atcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaac 1169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4286941 atcatgttttaagaaaatgtgtttactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacattgattatcttgactaaataaaac 4286842  T
Q  1170 aatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttaccaagtgctagtttatt 1269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4286841 aatctaatcttgaatgaaaacctgtgtgttattattgtttcctcctctcaaaattctgttcatacattactggggagtagttgccaagtgctagtttatt 4286742  T
Q  1270 gcatgtagtcaaatttatgattttttgatgt 1300  Q
    |||||||||||||||||||||||||| ||||    
T  4286741 gcatgtagtcaaatttatgatttttttatgt 4286711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 454 - 798
Target Start/End: Complemental strand, 4287567 - 4287222
Alignment:
Q  454 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactaatcttctccaaatatttccggaaaacaatttaatc 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  4287567 agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactattcttctccaaatatttccggaaaacaattcaatc 4287468  T
Q  554 gttaaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatct 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4287467 gttaaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatct 4287368  T
Q  654 tgcgtcataacacagaacctttaaaaaggatcaccttttagcaactgcaagatagattgaaagtgtataaaatgatagattaaactgattac-aaattgc 752  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4287367 tgcgtcataacacagaacctttaaaaaggatcaccttttagcaactgcaagatagattgaaagtgtataaaatgatagattaaactgattacaaaattgc 4287268  T
Q  753 aattcatattaagggatgattcgaaattagtttctaagacagtaaa 798  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  4287267 aattcatattaagggatgattcgaaattagtttcgaagacagtaaa 4287222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 188 - 412
Target Start/End: Complemental strand, 8123679 - 8123455
Alignment:
Q  188 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 287  Q
    |||||||||  ||||||||||| |||||||||| ||||| | ||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||    
T  8123679 ttgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaagaaaattcattatatttttcattgattctca 8123580  T
Q  288 taataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctag 387  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | | |||||||    
T  8123579 taataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagatcttctag 8123480  T
Q  388 atccttctagactaaggtgagtcat 412  Q
    ||||||||||| |||||| ||||||    
T  8123479 atccttctagattaaggtcagtcat 8123455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 199 - 412
Target Start/End: Complemental strand, 671602 - 671389
Alignment:
Q  199 caattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 297  Q
    |||||||||| ||||||||||| ||||| | | || |||||| ||||||| || ||||||||||||||||||||| |||||| |||||||||||||  ||    
T  671602 caattcgagttgggatcacacttcagaaatta-agagagaaagctagagataaaagaaagaaaattcattatatttttcattaattctcataataaggca 671504  T
Q  298 tacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctag 397  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||| |||| ||| |||||||||| |||||||||||| ||| ||| | |||||||||||    
T  671503 tacaatgattatataaacttgtgcatactcataataagataagtgtaccctaacctactcaatattatcccctaacaatatatcttatggatccttctag 671404  T
Q  398 actaaggtgagtcat 412  Q
    | |||||||||||||    
T  671403 attaaggtgagtcat 671389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
Q  188 ttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 287  Q
    |||||||||  |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattctca 41709552  T
Q  288 taataaaacatacaatgcttatatagact 316  Q
    ||||||  ||||||||| |||||||||||    
T  41709551 taataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 3e-39
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 4287658 - 4287571
Alignment:
Q  75 gaccaaggcctatattactagggtatgagtaatcgatagtcagcacagagagatgacaaaacagaagaatatagttttagggagcaag 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4287658 gaccaaggcctatattactagggtatgagtaatcgatagtcagcacagagagatgacaaaacagaagaatttagttttagggagcaag 4287571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 24108848 - 24108697
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaa-ctagagaaaagagaaagaaaattcattatattattcattcattctca 287  Q
    ||||||||  |||||||||||||||||||||||||||| | | ||| ||||| ||||||| ||   |||| |||||||||||||| ||||||  |||| |    
T  24108848 tgatacgacccaattcgagtagggatcacactccagaaatta-aggaagaaaactagagacaaacaaaaggaaattcattatatttttcattggttctaa 24108750  T
Q  288 taataaaacatacaatgcttatatagacttg-tgcatactcataataacataa 339  Q
    | |||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  24108749 tcataagacatacaatgcttatatagacttgttgcatactcataataaaataa 24108697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 4291124 - 4291072
Alignment:
Q  23 taaccctgcaacccaattgtagaaaaacaatagaaataaaaaattaaatcctg 75  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4291124 taaccctgcaacccaattgtagaaaaacaatagaactaaaaaattaaatcctg 4291072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 269
Target Start/End: Original strand, 10321869 - 10321949
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattat 269  Q
    ||||||||  ||||| ||||||||||||||||||| |||| |||| || || ||||||| ||||||||| |||||||||||    
T  10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagagaaaggaaattcattat 10321949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 2e-89; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 189 - 412
Target Start/End: Original strand, 42513062 - 42513285
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 42513161  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 388  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||| | ||||||||||    
T  42513162 aataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagaccttctaga 42513261  T
Q  389 tccttctagactaaggtgagtcat 412  Q
    |||||||||| |||||||||||||    
T  42513262 tccttctagattaaggtgagtcat 42513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 30456456 - 30456307
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30456357  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 339  Q
     ||||  |||| ||||||||||||||||| |||||||||||||||| ||||    
T  30456356 cataaggcatataatgcttatatagactt-tgcatactcataataagataa 30456307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 265 - 412
Target Start/End: Original strand, 38572287 - 38572434
Alignment:
Q  265 attatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatca 364  Q
    |||||||| || ||| |||||||||||||  ||||||||| ||||||||||||| ||||| ||||||||| ||||||| |||| ||| |||||||||| |    
T  38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcataataagataagtgtaccctaacttactcaatatta 38572386  T
Q  365 tcccctaacaagataccttctagatccttctagactaaggtgagtcat 412  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||    
T  38572387 tcccctaacaagataccttctagatccttttagattaaggtgagtcat 38572434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 30452847 - 30452702
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||    
T  30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattcgttctaat 30452748  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 339  Q
     ||||  |||||||    ||||||||||| |||||||||||||||| ||||    
T  30452747 cataaggcatacaa----tatatagactt-tgcatactcataataagataa 30452702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 199 - 311
Target Start/End: Complemental strand, 11206611 - 11206499
Alignment:
Q  199 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacat 298  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||  |||    
T  11206611 caattcgagtagagatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcataataaggcat 11206512  T
Q  299 acaatgcttatat 311  Q
    |||||| ||||||    
T  11206511 acaatgtttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 188 - 368
Target Start/End: Complemental strand, 41712443 - 41712265
Alignment:
Q  188 ttgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 286  Q
    |||||||||  ||||||||||| ||||||||||||| || || |||| || |||||||||| || |||||| |||||  |||| ||  ||||||||||||    
T  41712443 ttgatacgacccaattcgagtaaggatcacactccaaaaattaagagaga-aaactagagacaaaagaaaggaaatttgttatttt--tcattcattctc 41712347  T
Q  287 ataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatccc 368  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||| |||||||| ||||| |||||    
T  41712346 ataataagacatacaatacttatatagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatccc 41712265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 200 - 364
Target Start/End: Complemental strand, 49017266 - 49017102
Alignment:
Q  200 aattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacata 299  Q
    ||||||| |||||||||||||||| || | |||| ||||||||||||| || |||||||||||  |||||||| |||||| | |||||||||||  ||||    
T  49017266 aattcgaatagggatcacactccataaattagagagagaaactagagataaaagaaagaaaatatattatatttttcattaagtctcataataaggcata 49017167  T
Q  300 caatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatca 364  Q
    ||||||||||| | ||||||| ||| ||||||||| ||||||||| |  ||||||||||||||||    
T  49017166 caatgcttatacaaacttgtggatagtcataataagataagtgcatcataacatactcaatatca 49017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 556 - 640
Target Start/End: Complemental strand, 19990314 - 19990230
Alignment:
Q  556 taaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgat 640  Q
    ||||||||| ||||||||||||||||||||||| ||||||  |||||||||| ||| ||| |||||||||| ||| |||||||||    
T  19990314 taaacatattgatttgagatttcattttcttagtgacctcattaaagatggaatgattgatctagttcattacaaaacaaatgat 19990230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 313
Target Start/End: Complemental strand, 6103043 - 6102928
Alignment:
Q  199 caattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagag-aaagaaaattcattatattattcattcattctcataataaaac 296  Q
    ||||||||||||| ||||||||||| || || |||| || |||||||||| || || ||| ||||||||||||||| |||||| ||||| || || |||     
T  6103043 caattcgagtaggaatcacactccataaattaagagaga-aaactagagataaaagcaaaaaaaattcattatatttttcattgattctaatcatgaaag 6102945  T
Q  297 atacaatgcttatatag 313  Q
    |||||||||||||||||    
T  6102944 atacaatgcttatatag 6102928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1093 - 1147
Target Start/End: Complemental strand, 19972224 - 19972170
Alignment:
Q  1093 tactagttctaatattgatagcgtgctttcattcctaagcataaaaagaaacatt 1147  Q
    |||||| ||||||||||||||| |   |||||||| |||||||||||||||||||    
T  19972224 tactagctctaatattgatagcatcacttcattcccaagcataaaaagaaacatt 19972170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1046 - 1107
Target Start/End: Complemental strand, 19972306 - 19972245
Alignment:
Q  1046 tatactttcttcatgctttcatcaatcatgttttaagaaaatgtgtttactagttctaatat 1107  Q
    |||| |||||||||||||| ||||| |||||||| |||||| |  |||||||| ||||||||    
T  19972306 tataatttcttcatgctttgatcaaccatgttttgagaaaacgcatttactagctctaatat 19972245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 38572462 - 38572495
Alignment:
Q  418 cacattagtactcattattctaaatatcctatca 451  Q
    ||||||||||||||||||||||||||| ||||||    
T  38572462 cacattagtactcattattctaaatatactatca 38572495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 2e-83; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 189 - 389
Target Start/End: Complemental strand, 36326640 - 36326442
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 36326541  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 388  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36326540 aataaagcatacaatgcttatatagact--tgcatactcataataacctaagtgcaccctaacatactcaatatcatcccctaacaagataccttctaga 36326443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 250 - 412
Target Start/End: Complemental strand, 30912144 - 30911982
Alignment:
Q  250 agagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcacccca 349  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  |||||||| |||||||||||||||||||||||| ||||| |||||||||||| |    
T  30912144 agagaaagaaaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactcacaataaaataagtgcacccta 30912045  T
Q  350 acatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 412  Q
    ||||||||||||| ||||||||||||||||  || |||||||||||||| |||||||||||||    
T  30912044 acatactcaatattatcccctaacaagatatattttagatccttctagattaaggtgagtcat 30911982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 238 - 410
Target Start/End: Original strand, 55211737 - 55211905
Alignment:
Q  238 aaactagagaaaagagaaaga-aaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatactcataataaca 336  Q
    |||||||||| |||||| | | |||||||||||||| |||||| |||||||||||||  |||||||     ||||||||||||||||| ||||||||| |    
T  55211737 aaactagagataagagagaaataaattcattatatttttcattgattctcataataaggcatacaa-----atatagacttgtgcatattcataataaga 55211831  T
Q  337 taagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtc 410  Q
    ||||||||||| |||||||||||||| |||||||| ||| ||||||| | ||||||| |||| |||| ||||||    
T  55211832 taagtgcaccctaacatactcaatattatcccctaccaatataccttatggatccttttagattaagatgagtc 55211905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 14029467 - 14029381
Alignment:
Q  199 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattct 285  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||||| |||||||||||||| |||||| |||||    
T  14029467 caattcgagtagggatcacactccagaatttagagtgagaaactagagataaaagaaaggaaattcattatatttttcattgattct 14029381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 258 - 412
Target Start/End: Complemental strand, 32414821 - 32414663
Alignment:
Q  258 aaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgt----gcatactcataataacataagtgcaccccaacat 353  Q
    |||| |||||||||| || ||| |||||| ||||||  ||||||||| ||||||||||||||    ||| ||||| ||||| |||||||||||  |||||    
T  32414821 aaaaatcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgtttgtgcaaactcaaaataagataagtgcaccataacat 32414722  T
Q  354 actcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 412  Q
    ||| ||||| ||||||  |||| ||||||||||||||||| |||  |||||||||||||    
T  32414721 acttaatattatccccagacaatataccttctagatccttataggttaaggtgagtcat 32414663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 33328306 - 33328218
Alignment:
Q  236 agaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaatgcttatatagacttgtgcatac 325  Q
    |||||||| |||||| |||||| ||||| |||||||  ||||||  |||| || ||||| ||||||||||||||| |||||| |||||||    
T  33328306 agaaacta-agaaaaaagaaaggaaattgattatatctttcattggttctaattataaagcatacaatgcttatacagacttatgcatac 33328218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 30912185 - 30912146
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaatt 228  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  30912185 tgatacgactcaattcgagtacggatcacactccagaatt 30912146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 21224844 - 21224810
Alignment:
Q  28 ctgcaacccaattgtagaaaaacaatagaaataaa 62  Q
    ||||||||||||||||||||||||||| |||||||    
T  21224844 ctgcaacccaattgtagaaaaacaataaaaataaa 21224810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 32414889 - 32414847
Alignment:
Q  203 tcgagtagggatcacactccagaattcagagggagaaactaga 245  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  32414889 tcgagtagggatcacactccaaaatttagagagagaaactaga 32414847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 418 - 451
Target Start/End: Complemental strand, 30911954 - 30911921
Alignment:
Q  418 cacattagtactcattattctaaatatcctatca 451  Q
    ||||||||||||||||||||||| ||||||||||    
T  30911954 cacattagtactcattattctaagtatcctatca 30911921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 5e-78; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 5e-78
Query Start/End: Original strand, 187 - 412
Target Start/End: Complemental strand, 4834871 - 4834644
Alignment:
Q  187 gttgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctc 286  Q
    ||||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  4834871 gttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattcta 4834772  T
Q  287 ataataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagata--ccttc 384  Q
    ||||| |  |||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||  ||||     
T  4834771 ataatgaggcatacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatattatcccctaataagatactccttt 4834672  T
Q  385 tagatccttctagactaaggtgagtcat 412  Q
    |||||||||||||| |||||||||||||    
T  4834671 tagatccttctagattaaggtgagtcat 4834644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 3e-70
Query Start/End: Original strand, 189 - 412
Target Start/End: Complemental strand, 7415789 - 7415566
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||| ||| | |||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7415690  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 388  Q
    |||||  |||||||||||||||||||||| ||  |||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||  |||||||    
T  7415689 aataaggcatacaatgcttatatagacttatgtgtactcataataagataagtgcaccataacatactcaatattatcccctaacaagataatttctaga 7415590  T
Q  389 tccttctagactaaggtgagtcat 412  Q
    |||||||| | |||| ||||||||    
T  7415589 tccttctaaattaagatgagtcat 7415566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 2e-65
Query Start/End: Original strand, 189 - 396
Target Start/End: Complemental strand, 7422797 - 7422590
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  ||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 7422698  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 388  Q
    |||||  |||||||||||||||||||||| ||  ||||| |||||| |||||||||||  |||||||||||| | |||||||||||||||| ||||||||    
T  7422697 aataaggcatacaatgcttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatgttatcccctaacaagataacttctaga 7422598  T
Q  389 tccttcta 396  Q
    ||||||||    
T  7422597 tccttcta 7422590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 1e-63
Query Start/End: Original strand, 189 - 409
Target Start/End: Complemental strand, 7426736 - 7426516
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaagaaaattcattatatttttcattgattctcat 7426637  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 388  Q
    |||||  ||||||||| |||||||||||| ||  ||||| |||||| |||||||||||  |||||||||||||| |||||||||||||||| ||||||||    
T  7426636 aataaggcatacaatgtttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatattatcccctaacaagataacttctaga 7426537  T
Q  389 tccttctagactaaggtgagt 409  Q
    |||| ||||| |||| |||||    
T  7426536 tcctactagattaagatgagt 7426516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 189 - 412
Target Start/End: Complemental strand, 33242998 - 33242776
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||| ||||||||||||||| | |||| ||||||||||| | || |||||  |||||||||||||| |||||| ||||||||    
T  33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaagaaaagaaattcattatatttttcattgattctcat 33242899  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctaga 388  Q
    |||||  ||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |||||||||||| ||  |||||| |    
T  33242898 aataaggcatacaatgcttatatagacttgtgcatactcataataagataagtgca-cctaacatactcaatattatcccctaacaatatgtcttctaaa 33242800  T
Q  389 tccttctagactaaggtgagtcat 412  Q
    ||||| ||||||||| ||| ||||    
T  33242799 tccttatagactaagatgactcat 33242776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctaat 13886592  T
Q  289 aat 291  Q
    |||    
T  13886591 aat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 13886585 - 13886515
Alignment:
Q  342 gcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 412  Q
    |||||| |||||||| ||||| | ||| |||||| ||||||| |||||| ||||||| |||||||||||||    
T  13886585 gcaccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcat 13886515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 6e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 6e-59
Query Start/End: Original strand, 189 - 412
Target Start/End: Original strand, 18583886 - 18584109
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 287  Q
    ||||||||  |||||||||||| ||| ||||||||||| || |||| || |||||||||| || |||||| ||||||| |||||| |||||| |||||||    
T  18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagaga-aaactagagataaaagaaaggaaattcagtatatttttcattgattctca 18583984  T
Q  288 taataaaacatacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctag 387  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||  |||| ||||||| |||||||||||||| ||||||||| || ||||||| |||    
T  18583985 taataaagcatacaatgcttatatagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatcccctaataatataccttttag 18584084  T
Q  388 atccttctagactaaggtgagtcat 412  Q
    ||||||||||| |||||||||||||    
T  18584085 atccttctagattaaggtgagtcat 18584109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 189 - 339
Target Start/End: Original strand, 23405475 - 23405625
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaagaaaattcattatatttttcattgattctcat 23405574  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 339  Q
    |||||  ||||||||| ||| |||||||||||||||| |||| ||| ||||    
T  23405575 aataaggcatacaatgtttagatagacttgtgcatacacatagtaagataa 23405625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 21075941 - 21076031
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 279  Q
    |||||||||  ||||||||||||||| ||||||||||||| || | ||||||||| ||| || |||||| ||||||| |||||| ||||||    
T  21075941 tgatacgatcaaattcgagtagggatgacactccagaatttagcgagagaaactacagataaaagaaaggaaattcactatatttttcatt 21076031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 412
Target Start/End: Complemental strand, 13087696 - 13087634
Alignment:
Q  349 aacatactcaatatcatcccctaacaagataccttctagatccttctagactaaggtgagtcat 412  Q
    ||||||||| |||| |||||||||||| ||||||||||||| | |||||| |||||||||||||    
T  13087696 aacatactcgatattatcccctaacaatataccttctagat-cgtctagattaaggtgagtcat 13087634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 9893883 - 9893803
Alignment:
Q  199 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcatt 279  Q
    ||||| ||||||| |||||||| || |||| || |  ||||||||||||  | ||||||||||||||||||||| ||||||    
T  9893883 caatttgagtaggtatcacactgcataatttagtgaaagaaactagagatgaaagaaagaaaattcattatatttttcatt 9893803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 316
Target Start/End: Complemental strand, 13087817 - 13087701
Alignment:
Q  199 caattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattatt-cattcattctcataataaaaca 297  Q
    |||||||| |||| ||||||||||||||||  ||| |||    || ||| || |||||  ||||||||| |||| || ||||||||||||||||||  ||    
T  13087817 caattcgaataggtatcacactccagaatttcgagagaggt--taaagataaaagaaaataaattcattgtattttttcattcattctcataataaggca 13087720  T
Q  298 tacaatgcttatatagact 316  Q
    |||||| ||||||||||||    
T  13087719 tacaatacttatatagact 13087701  T

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Target: chr8 (Bit Score: 94; Significance: 3e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 189 - 330
Target Start/End: Complemental strand, 44762117 - 44761976
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||| ||| ||||    
T  44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaaaaattcattatatttttcattgattttcat 44762018  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcata 330  Q
    |||||  ||||||||| |||||||||||||||||||| ||||    
T  44762017 aataaggcatacaatgtttatatagacttgtgcatacacata 44761976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 7e-43
Query Start/End: Original strand, 189 - 330
Target Start/End: Complemental strand, 44765424 - 44765283
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||||    
T  44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaagaaaattcattatatttttcattgattttcat 44765325  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcata 330  Q
    |||||   |||||||| |||||||||||||||||||| ||||    
T  44765324 aataaggaatacaatgtttatatagacttgtgcatacacata 44765283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 7e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 7e-34
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 27387770 - 27387620
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcat 288  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||  |  ||||  |||||||||||||| ||||||| | || ||    
T  27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaaggaaaagaaattcattatatttttcattcctgctaat 27387671  T
Q  289 aataaaacatacaatgcttatatagacttgtgcatactcataataacataa 339  Q
    ||| |  |||||||||||||||||||||||||||| ||| |||||| ||||    
T  27387670 aatgaggcatacaatgcttatatagacttgtgcatcctcgtaataagataa 27387620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 189 - 321
Target Start/End: Original strand, 55322334 - 55322467
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaattcagagggagaaactagagaaaagagaaagaaaattcatta-tattattcattcattctca 287  Q
    ||||||||  |||||||||||||||||||||||||||||| ||| | |||| ||||||| || |||||| |||||||||| |||| ||||||||| || |    
T  55322334 tgatacgacccaattcgagtagggatcacactccagaatttagaagtagaagctagagataaaagaaaggaaattcattattatttttcattcatcctaa 55322433  T
Q  288 taataaaacatacaatgcttatatagacttgtgc 321  Q
    |||| |  ||||||||||||||||||||||||||    
T  55322434 taatgaggcatacaatgcttatatagacttgtgc 55322467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 20441029 - 20441141
Alignment:
Q  299 acaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttctaga 398  Q
    ||||||||| || ||||||||||||||||||||||| ||||||||||||  |||| |||||||| ||||| |||||| |||| || ||||| |||||| |    
T  20441029 acaatgcttgtacagacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatcccttaacaatatactttttagat-cttctaaa 20441127  T
Q  399 ctaaggtgagtcat 412  Q
     |||||||||||||    
T  20441128 ttaaggtgagtcat 20441141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 189 - 330
Target Start/End: Complemental strand, 36050813 - 36050673
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 287  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36050716  T
Q  288 taataaaacatacaatgcttatatagacttgtgcatactcata 330  Q
    ||||||  ||||||||| |||||||||||||||||||| ||||    
T  36050715 taataaggcatacaatgtttatatagacttgtgcatacacata 36050673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 189 - 330
Target Start/End: Complemental strand, 36054072 - 36053932
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 287  Q
    ||||||||  ||||||||||||||||||||||||| || || | || || |||||||||| || |||||  |||||||||||||| ||||||    ||||    
T  36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagaga-aaactagagataaaagaaaagaaattcattatatttttcatttcc-ctca 36053975  T
Q  288 taataaaacatacaatgcttatatagacttgtgcatactcata 330  Q
    ||||||  ||||||||| |||||||||||||||||||| ||||    
T  36053974 taataaggcatacaatgtttatatagacttgtgcatacacata 36053932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 313
Target Start/End: Complemental strand, 24733756 - 24733642
Alignment:
Q  199 caattcgagtagggatcacactccaga-attcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaaca 297  Q
    |||||| |||||||||||||||  ||| ||| |||| || |||||||| | || |||||| |||||||||||||| ||||||| |||| || || |||||    
T  24733756 caattcaagtagggatcacactttagatattaagagaga-aaactagatataaaagaaaggaaattcattatatttttcattccttctaatcatgaaaca 24733658  T
Q  298 tacaatgcttatatag 313  Q
    ||||||||||||||||    
T  24733657 tacaatgcttatatag 24733642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 416 - 451
Target Start/End: Complemental strand, 36050554 - 36050519
Alignment:
Q  416 accacattagtactcattattctaaatatcctatca 451  Q
    ||||||||||||||||||||||||||||||||||||    
T  36050554 accacattagtactcattattctaaatatcctatca 36050519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 416 - 451
Target Start/End: Complemental strand, 36053813 - 36053778
Alignment:
Q  416 accacattagtactcattattctaaatatcctatca 451  Q
    ||||||||||||||||||||||||||||||||||||    
T  36053813 accacattagtactcattattctaaatatcctatca 36053778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 1e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 297 - 412
Target Start/End: Complemental strand, 31211731 - 31211616
Alignment:
Q  297 atacaatgcttatatagacttgtgcatactcataataacataagtgcaccccaacatactcaatatcatcccctaacaagataccttctagatccttcta 396  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||| | |||||||||||||| |||||||||||| ||| |||||| |||||||||    
T  31211731 atacaatacttatatagacttatgcatactcatattaagataagtgcactctaacatactcaatattatcccctaacaatatatcttctaaatccttcta 31211632  T
Q  397 gactaaggtgagtcat 412  Q
    || ||| |||||||||    
T  31211631 gattaaagtgagtcat 31211616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 31211963 - 31211859
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctca 287  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| || |||||||||| || ||||||||||||||||||||| |||||| |||||||    
T  31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagaga-aaactagagataaaagaaagaaaattcattatatttttcattgattctca 31211865  T
Q  288 taataa 293  Q
    ||||||    
T  31211864 taataa 31211859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 205 - 339
Target Start/End: Original strand, 45327420 - 45327554
Alignment:
Q  205 gagtagggatcacactccagaa-ttcagagggagaaactagagaaaagagaaagaaaattcattatattattcattcattctcataataaaacatacaat 303  Q
    |||||||||||||||||||||| || |||| || ||| |||||| || |||||  ||||| |||||||| ||||||  |||||||||||| |||||||||    
T  45327420 gagtagggatcacactccagaaattaagagaga-aaattagagataaaagaaaagaaatttattatatttttcattttttctcataataagacatacaat 45327518  T
Q  304 gcttatatagacttgtgcatactcataataacataa 339  Q
    |||||||||||||||||||||| |||| ||| ||||    
T  45327519 gcttatatagacttgtgcatacacatagtaagataa 45327554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 31193317 - 31193244
Alignment:
Q  199 caattcgagtagggatcacactccag-aattcagagggagaaactagagaaaagagaaagaaaattcattatatt 272  Q
    ||||||||||||||||||||||| || |||| |||| || ||||||||||  | |||||||||||| ||||||||    
T  31193317 caattcgagtagggatcacactctagaaattaagagaga-aaactagagatgaaagaaagaaaatttattatatt 31193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 226
Target Start/End: Original strand, 40400909 - 40400946
Alignment:
Q  189 tgatacgattcaattcgagtagggatcacactccagaa 226  Q
    ||||| || |||||||||||||||||||||||||||||    
T  40400909 tgatatgactcaattcgagtagggatcacactccagaa 40400946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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