View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_10 (Length: 484)

Name: NF7636_high_10
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_10
NF7636_high_10
[»] chr7 (4 HSPs)
chr7 (57-472)||(35380732-35381163)
chr7 (143-377)||(35354831-35355065)
chr7 (146-455)||(35370278-35370583)
chr7 (426-472)||(35355103-35355149)
[»] chr4 (2 HSPs)
chr4 (181-378)||(19684519-19684716)
chr4 (145-378)||(19630110-19630344)
[»] chr8 (5 HSPs)
chr8 (22-56)||(9267634-9267668)
chr8 (266-323)||(2251396-2251453)
chr8 (266-323)||(2256744-2256801)
chr8 (25-64)||(30087716-30087756)
chr8 (23-55)||(32642647-32642679)
[»] chr2 (1 HSPs)
chr2 (22-55)||(5443910-5443943)
[»] chr1 (1 HSPs)
chr1 (22-57)||(2619594-2619630)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 57 - 472
Target Start/End: Original strand, 35380732 - 35381163
Alignment:
Q  57 ttaattatgtttaatgaataattaaagagctttgacgccttattatat-------------------acaccttgttatgtcaaagtaacataaaatttc 137  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||                   |||||||||||||||||||||||||||||||||    
T  35380732 ttaattatgtttaatgaataattaaagagttttgacgccttattatattattgattaactaaccatgacaccttgttatgtcaaagtaacataaaatttc 35380831  T
Q  138 atttctttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatctt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35380832 atttctttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatctt 35380931  T
Q  238 ccgtggctgcattgtatggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactt 337  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35380932 ccgtggctgcattgtatggttatatattttacattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaactcctctcttactt 35381031  T
Q  338 tcccattttaaagtatctctcatacacaccgtcgtaagtttacaatgttgttactattgttaatgaacttcatagagtctaatcaaagtccatatgctaa 437  Q
    |||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35381032 tcccattttaaagtatctctcatacacaccatcgtaagtttacaa---tgttactattgttaatgaacttcatagtgtctaatcaaagtccatatgctaa 35381128  T
Q  438 ttaattattttcttcttgatatatttccacaggtt 472  Q
    |||||||||||||||||||||||||||||||||||    
T  35381129 ttaattattttcttcttgatatatttccacaggtt 35381163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 143 - 377
Target Start/End: Original strand, 35354831 - 35355065
Alignment:
Q  143 tttgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtg 242  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||    
T  35354831 tttgacagctgtgacacacccatttgcggagcatttgtcatattttacactttttgctataccaatgttgacaacattgttcatcaaaaaatcttctgtg 35354930  T
Q  243 gctgcattgtatggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttccca 342  Q
    |||||| | ||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35354931 gctgcactatatggctatgtctttttcattgatttcatgaacaacatgggtcattgcaactttgagttcattcctaagaaactcctctcttactttccca 35355030  T
Q  343 ttttaaagtatctctcatacacaccgtcgtaagtt 377  Q
    |||| |||||||||||||||||||| |||||||||    
T  35355031 ttttgaagtatctctcatacacaccatcgtaagtt 35355065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 146 - 455
Target Start/End: Original strand, 35370278 - 35370583
Alignment:
Q  146 gacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtggct 245  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||    
T  35370278 gacagctgtggcacacccatttgccgagcatttgtcatattttacactttttgctataccaatgttaacaacattgttcatcaaaaaatcatctgtggct 35370377  T
Q  246 gcattgtatggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattt 345  Q
    ||| | ||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||   |    
T  35370378 gcactatatggctatgtctttttcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaat 35370477  T
Q  346 taaagtatctctcatacacaccgtcgtaagtttacaatgttgttactattgttaatgaacttcatagagtct--aatcaaagtccatatgctaattaatt 443  Q
    | ||||||||||| |||||||| |||||||||||||||||  ||| ||||| ||||||| ||||||   |||  ||||||||||||||| |||||   ||    
T  35370478 tgaagtatctctcttacacaccatcgtaagtttacaatgt--ttaatattg-taatgaaattcataacttctacaatcaaagtccatatactaat---tt 35370571  T
Q  444 attttcttcttg 455  Q
    ||||||||||||    
T  35370572 attttcttcttg 35370583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 35355103 - 35355149
Alignment:
Q  426 tccatatgctaattaattattttcttcttgatatatttccacaggtt 472  Q
    ||||||||||||||  ||||||||| | |||||||||||||||||||    
T  35355103 tccatatgctaattgtttattttctccgtgatatatttccacaggtt 35355149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 181 - 378
Target Start/End: Original strand, 19684519 - 19684716
Alignment:
Q  181 catattttacactttttgctatcccaatgttgacaacattgttcatcaataaatcttccgtggctgcattgtatggctatatattttacattgatttcat 280  Q
    ||||||| |||||||||  ||| ||||||||||||||||||||||| || |||||    |||| |||||||||||| ||||| |||||||| ||||| ||    
T  19684519 catatttcacactttttcttataccaatgttgacaacattgttcatgaaaaaatcgagtgtggttgcattgtatggttatatcttttacatcgattttat 19684618  T
Q  281 gaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttaaagtatctctcatacacaccgtcgtaagttt 378  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||   || ||||||||| |||||||||| ||||||||||    
T  19684619 gaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccccaattgaagtatctcacatacacaccatcgtaagttt 19684716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 145 - 378
Target Start/End: Complemental strand, 19630344 - 19630110
Alignment:
Q  145 tgacagctgtcgcacacccatttgcggagcatttgtcatattttacactttttgctatcccaatgttga-caacattgttcatcaataaatcttccgtgg 243  Q
    ||||||||||   |||||||||||| |||   ||| ||||||| |||||||||  ||||||||| |||| ||||| ||||| | || ||||| ||  | |    
T  19630344 tgacagctgtgatacacccatttgctgagatattggcatatttcacacttttttttatcccaatattgagcaacaatgttcgtaaaaaaatcgtctattg 19630245  T
Q  244 ctgcattgtatggctatatattttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccat 343  Q
    ||||  ||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |    
T  19630244 ctgcggtgtatggttatatcttttacatcgattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttcccct 19630145  T
Q  344 tttaaagtatctctcatacacaccgtcgtaagttt 378  Q
     || ||||||||||| |||||||| ||||||||||    
T  19630144 attgaagtatctctcgtacacaccatcgtaagttt 19630110  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 9267668 - 9267634
Alignment:
Q  22 cctaaaacgacatacaattgggacggagggagtaa 56  Q
    |||||| ||||||||||||||||||||||||||||    
T  9267668 cctaaagcgacatacaattgggacggagggagtaa 9267634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 2251396 - 2251453
Alignment:
Q  266 ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa 323  Q
    |||||||||||||||||| ||  ||||||| || || ||||||||| |||||||||||    
T  2251396 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa 2251453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 2256801 - 2256744
Alignment:
Q  266 ttacattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaa 323  Q
    |||||||||||||||||| ||  ||||||| || || ||||||||| |||||||||||    
T  2256801 ttacattgatttcatgaataatttgggtcactgtaattttgagttcattcctaagaaa 2256744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 30087756 - 30087716
Alignment:
Q  25 aaaacgacatacaatt-gggacggagggagtaattaattat 64  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  30087756 aaaacgtcatacaatttgggacggagggagtaattaattat 30087716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 32642647 - 32642679
Alignment:
Q  23 ctaaaacgacatacaattgggacggagggagta 55  Q
    ||||| |||||||||||||||||||||||||||    
T  32642647 ctaaagcgacatacaattgggacggagggagta 32642679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 5443910 - 5443943
Alignment:
Q  22 cctaaaacgacatacaattgggacggagggagta 55  Q
    ||||||||||||||||||||||||||||| ||||    
T  5443910 cctaaaacgacatacaattgggacggaggaagta 5443943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 2619594 - 2619630
Alignment:
Q  22 cctaaaacgacatacaa-ttgggacggagggagtaat 57  Q
    ||||||||||||||||| |||||||||||||||||||    
T  2619594 cctaaaacgacatacaatttgggacggagggagtaat 2619630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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