View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_11 (Length: 482)
Name: NF7636_high_11
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_11 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 23 - 475
Target Start/End: Complemental strand, 9526739 - 9526287
Alignment:
| Q |
23 |
aaatgttcgatacttaggtttataaagaaccaaaaatgttgggagagatcggcatcttaaataaatatcagttatatcgtagaattagtctctgtagttg |
122 |
Q |
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| T |
9526739 |
aaatgttcgatacttaagtttataaagaaccaaaaatgttgggagagatcggcatcttaaataaatatcagttatatcgtagaattagtctctgtagttg |
9526640 |
T |
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| Q |
123 |
tatacggaatctgccccggctaaatcaaaaaataacccctgatcatttaagtgtagactccagataaattcttttgacatattagatatacatgtaaatt |
222 |
Q |
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| T |
9526639 |
tatacggaatctgccccggttaaatcaaaaaataacccctgatcatttatgtgtatactgcagataaattcttttgacatatgatatatacatgtaaatt |
9526540 |
T |
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| Q |
223 |
ttgttgctgatataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgat |
322 |
Q |
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| T |
9526539 |
atgttgttgatataggtacagagctgtaacaagtgcatactatagaggtgcattaggagcaatgctagtatatgacataaccaaaaggcaatcttttgat |
9526440 |
T |
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| Q |
323 |
catgttgctaaatgggttgaggaacttagagcacatgcagataactcaattgtgatcatgctagttggtaacaaaggtgaccttgttgacttgagaatgg |
422 |
Q |
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| T |
9526439 |
catgttgctaaatgggttgaggaacttagagcacatgcagataactcaattgtgatcatgctagttggtaacaaaggtgaccttgttgatttgagaatgg |
9526340 |
T |
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| Q |
423 |
ttcctactgaagatgcagttgagtttgcagaagaccaaggtttattcttctca |
475 |
Q |
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| T |
9526339 |
tccctactgaagatgcagttgagtttgcagaagaccaaggtttattcttctca |
9526287 |
T |
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Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 232 - 408
Target Start/End: Original strand, 48932172 - 48932348
Alignment:
| Q |
232 |
atataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgatcatgttgct |
331 |
Q |
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| T |
48932172 |
atataggtacagagcggttacaagtgcatactacagaggagcattaggggccatgctggtgtatgacataactaaaagacaaacgtttgatcatgtagct |
48932271 |
T |
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| Q |
332 |
aaatgggttgaggaacttagagcacatgcagataactcaattgtgatcatgctagttggtaacaaaggtgaccttgt |
408 |
Q |
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| T |
48932272 |
agatggattgaggaactacggtcacacgccgacaactccatcgtgatcatgctaattggtaacaaaggtgatcttgt |
48932348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 14388 - 14479
Alignment:
| Q |
233 |
tataggtacagggctgttacaagtgcatactatagaggtgcattaggagccatgctagtatatgacataaccaaaagacaatcatttgatca |
324 |
Q |
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| T |
14388 |
tataggtacagggcagttactagtgcatactatcgaggtgcagttggggcaatgttagtttacgacatgacaaaacgtcaatcattcgatca |
14479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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