View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_20 (Length: 432)
Name: NF7636_high_20
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 42342823 - 42342426
Alignment:
| Q |
16 |
atatgaacataaaagacattaaataagatgtttgttaccttcaggaaatcaccctctaactctttcaaaaactgttgaatctgcacaagctcaaataaac |
115 |
Q |
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| T |
42342823 |
atatgaacataaaagacattaaataagatgtttgttaccttcaggaattcaccctctaactctttcaaaaactgttgaatctgcacaagctcaaataaac |
42342724 |
T |
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| Q |
116 |
tatgattgaatgacacatttggaaagatgtaaaataatacagtggctaagtaattgaatgctaatatatctagagaaggatgtcactagataatcattgt |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42342723 |
tatgattgaatgacccatttggaaagatgtaaaataatatagtggctaagtaattgaatgctaatatatctagagaaagatgtcactagataatcattgt |
42342624 |
T |
|
| Q |
216 |
aagcttctgcctatatccattttgtaattcactataagcaaacaataatactattataaagtagacttcatgctgtacttgtaacattttacatgtagaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342623 |
aagcttctgcctatatccattttgtaattcactataagcaaacaataatactattataaagtagacttcatgctgtacttgtaacattttacatgtagaa |
42342524 |
T |
|
| Q |
316 |
atttccttagtataaaaattttcaagaagagttgctctatcaatcattttgggtcatcttgaaagcatagacaataatcagagcaatgattgacttag |
413 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342523 |
atttccttagtataaaatttttcaagaagagttgctctatcaatcattttgggtcatcttgaaagcatagacaataatcagagcaatgattgacttag |
42342426 |
T |
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