View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_25 (Length: 408)
Name: NF7636_high_25
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 9662002 - 9661651
Alignment:
| Q |
17 |
tcaacaatgtccaacaacagcaacaacaacgcatgtgggttgatatcatgcgacaaacttgacagagttgccaactgggtcggcaccaacgtggcttctg |
116 |
Q |
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| T |
9662002 |
tcaacaatgtccaacaacagcaacaacaacgcatgtgggttgatatcatgcgacaaacttgacagagttgccaactgggtcggcaccaacgtggcttctg |
9661903 |
T |
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| Q |
117 |
ctttctttgcttccttggaacgttgttcttgcatcaaccttaccaccactgacattgaagatgataacaacaacgatgatcttcctctcatggttactaa |
216 |
Q |
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| T |
9661902 |
ctttctttgcttccttggaacgttgttcttgcatcaaccttaccaccactgacattgaagatgataacaacaacgatgatcttcctctcatggttactac |
9661803 |
T |
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| Q |
217 |
gcctgtttctcatcttccttttgagggtcccaccacttctcttccttcaaaatccaaccttcgttcttgatctcttttt-ggtttgtaatattaactctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9661802 |
ccctgtttctcatcttccttttgagggtcccaccacttctcttccttcaaaatccaaccttcgttcttgatctctttttcggtttgtaatattaactctt |
9661703 |
T |
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| Q |
316 |
tgtgttattgggttctttagttattcatcttgtcatcatcaaaatttagtct |
367 |
Q |
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| T |
9661702 |
tgtgttcttgggttctttagttattcatcttgtcatcatcaaaatttagtct |
9661651 |
T |
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