View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_27 (Length: 405)
Name: NF7636_high_27
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 7876559 - 7876946
Alignment:
| Q |
17 |
aatgtcacatattgatactagcaataaatttcaccacatgaaagcgtacagtgtcaagtctaaaataagaaacacgttcaacnnnnnnnnggttactatt |
116 |
Q |
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| T |
7876559 |
aatgtcacatattgatactagcaataaatt-caccacatgaaagcgtacagtgttaagtctaaaataagaaacacgttcaacaaaaaaaaggttactatt |
7876657 |
T |
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| Q |
117 |
gtgttcgggtgtttctgttatgtaactcaaaaggatgagaggagagaaagttaacacaaatgtaaatttagtattgagtaaaatggtgattatatcaagc |
216 |
Q |
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| T |
7876658 |
gtgttcgggtgtttctgttatgtaactcaaaaggatgagaggagagaaagttaacacaaatgtaaatttagtattgagtaaaatggtgattatatcaagc |
7876757 |
T |
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| Q |
217 |
aattacatcccttatattctaaataaatcccttgatttaagggatttgactctcctaatatatttagatttaaagtttaggcatacccctttctgtttta |
316 |
Q |
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| T |
7876758 |
aaatacatcccttatattctaaataaatcccttgatttaagggatttgactctcctaatatatttagatttaaagtttaggcatacacctttctgtttta |
7876857 |
T |
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| Q |
317 |
gaattgtaagttttctctaacacaatctcattgaggttttgaaaaatgcttaatgtatctctttcagaattaacaatgcatagatttcc |
405 |
Q |
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| T |
7876858 |
gaattgtaggttttctctaacacaatctcattgaggttttgaaaaatgcttaatgtatctctttcagaattaacaatgcatagatttcc |
7876946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 17782784 - 17782728
Alignment:
| Q |
286 |
ttaaagtttaggcatacccctttctgttttagaattgtaagttttctctaacacaat |
342 |
Q |
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| T |
17782784 |
ttaaagttcaggcataccccttcctgttttagaatcgtaagttttctccaacacaat |
17782728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 17782664 - 17782609
Alignment:
| Q |
348 |
tgaggttttgaaaaatgcttaatgtatctctttcagaattaacaatgcatagatttcc |
405 |
Q |
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| T |
17782664 |
tgaggttttgaaaaatgtttaatgcatct--ttcagaactaacaatgcatagatttcc |
17782609 |
T |
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