View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_3 (Length: 672)

Name: NF7636_high_3
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_3
NF7636_high_3
[»] chr3 (1 HSPs)
chr3 (360-651)||(52086859-52087150)
[»] chr1 (3 HSPs)
chr1 (21-258)||(52980459-52980695)
chr1 (301-359)||(52980738-52980796)
chr1 (303-362)||(52980171-52980229)
[»] chr2 (3 HSPs)
chr2 (21-249)||(14519349-14519576)
chr2 (302-360)||(14519583-14519641)
chr2 (84-160)||(28385173-28385249)
[»] chr8 (2 HSPs)
chr8 (88-169)||(35411177-35411258)
chr8 (301-334)||(35411444-35411477)
[»] chr7 (8 HSPs)
chr7 (305-359)||(17502151-17502205)
chr7 (305-359)||(17508296-17508350)
chr7 (305-359)||(17544864-17544918)
chr7 (305-359)||(17551009-17551063)
chr7 (167-230)||(17502279-17502342)
chr7 (167-230)||(17508159-17508222)
chr7 (167-230)||(17544992-17545055)
chr7 (167-230)||(17550872-17550935)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 360 - 651
Target Start/End: Complemental strand, 52087150 - 52086859
Alignment:
Q  360 tagttttacatatctagctataagtgtgtaaccatttttcatttttataagaaaacttcaaccaaaacaaattctttaaaatcaccggctattccaattt 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52087150 tagttttacatatctagctataagtgtgtaaccatttttcatttttataaggaaacttcaaccaaaacaaattctttaaaatcaccggctattccaattt 52087051  T
Q  460 cccagtaaaatacatatatacactatgcccaaacataacaatattattaagaaaaggttactttgataaatacaaataaacggataatcaactaaaatca 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52087050 cccagtaaaatacatatatacactatgcccaaacataacaatattattaagaaaaggttactttgataaatacaaataaacggataatcaactaaaatca 52086951  T
Q  560 tacagcactaatttacaatgcagcaaaagcatcatccacccatctcttatgttgaacagatgcgtcgccattttcagtattattggcactag 651  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52086950 tacagcactaatttacaaagcagcaaaagcatcatccacccatctcttatgttgaacagatgcgtcgccatttccagtattattggcactag 52086859  T

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Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 52980459 - 52980695
Alignment:
Q  21 tcatgtgggagattgaatggagaagaatgaaaagtgatgggctattggaaaacattttggatgtggataagaattggatttgtttaaataaaaaagttaa 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52980459 tcatgcgggagattgaatggagaagaatgaaaagtgatgggctattggaaaacattttggatgtggataagaattggatttgtttaaataagaaagttaa 52980558  T
Q  121 aatttaggatattgtccgaggaagaagcaacaaacacatgatgtaatttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgttt 220  Q
    ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52980559 aa---aggatattgtccgaggaagaagcaacaaacacatgatgtaatttagagaaaagaaggaagaattttaaaacaacattgttgctgtgtttttgttt 52980655  T
Q  221 c--cagagagacagtgagagaagaatagagagaacatgtc 258  Q
    |   |||||||| |||||||||||||||||||||||||||    
T  52980656 cgggagagagacggtgagagaagaatagagagaacatgtc 52980695  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 52980738 - 52980796
Alignment:
Q  301 tttgattggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 359  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  52980738 tttgattggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 52980796  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 52980229 - 52980171
Alignment:
Q  303 tgattggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctctag 362  Q
    ||||| |||||||||||| ||| |||| |||| |||||||||| ||||||||||||||||    
T  52980229 tgattagttgtttctaaa-tataacgtgttatgttcgtttgcatctaagaatttctctag 52980171  T

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Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 14519349 - 14519576
Alignment:
Q  21 tcatgtgggagattgaatggagaagaatgaaaagtgatgggctattggaaaacattttggatgtggataagaattggatttgtttaaataaaaaagttaa 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14519349 tcatgcgggagattgaatggagaagaatgaaaagtgatgggctattgaaaaacattttggatgtggataagaattggatttgtttaaataagaaagttaa 14519448  T
Q  121 aatttaggatattgtccgaggaagaagcaacaaacacatgatgtaatttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgttt 220  Q
    ||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14519449 aa---aggatattgtccgaggaagaagcaacaaacacatgatgtaatatagagaaaagaagaaagaattctaaaacaacattgttgctgtgtttttgttt 14519545  T
Q  221 c--cagagagacagtgagagaagaatagaga 249  Q
    |   |||||||| ||||||||||||||||||    
T  14519546 ctagagagagacggtgagagaagaatagaga 14519576  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 14519583 - 14519641
Alignment:
Q  302 ttgattggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctct 360  Q
    |||||||||||||| ||||||||||||| |||| |||||||||| ||||||||||||||    
T  14519583 ttgattggttgtttttaaactatgacgtgttatgttcgtttgcatctaagaatttctct 14519641  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 28385173 - 28385249
Alignment:
Q  84 tggataagaattggatttgtttaaataaaaaagttaaaatttaggatattgtccgaggaagaagcaacaaacacatg 160  Q
    |||||||||||||||||||||||||||||||||| | || | |||||||| | ||| | ||||| |||||| |||||    
T  28385173 tggataagaattggatttgtttaaataaaaaagtgagaaataaggatattattcgaagtagaagtaacaaatacatg 28385249  T

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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 35411177 - 35411258
Alignment:
Q  88 taagaattggatttgtttaaataaaaaagttaaaatttaggatattgtccgaggaagaagcaacaaacacatgatgtaattt 169  Q
    |||||||| ||||||||||||||| ||||| |||| | ||||||||||| ||||||||||||||||| |||||||| |||||    
T  35411177 taagaattagatttgtttaaataagaaagtgaaaaataaggatattgtctgaggaagaagcaacaaatacatgatgaaattt 35411258  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 35411444 - 35411477
Alignment:
Q  301 tttgattggttgtttctaaactatgacgtattat 334  Q
    |||||||||||||||||||||||||| |||||||    
T  35411444 tttgattggttgtttctaaactatgaggtattat 35411477  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 17502205 - 17502151
Alignment:
Q  305 attggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 359  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17502205 attggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 17502151  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 17508296 - 17508350
Alignment:
Q  305 attggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 359  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17508296 attggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 17508350  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 17544918 - 17544864
Alignment:
Q  305 attggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 359  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17544918 attggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 17544864  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 17551009 - 17551063
Alignment:
Q  305 attggttgtttctaaactatgacgtattatattcgtttgcacctaagaatttctc 359  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  17551009 attggttgtttctaaactatgacgtgttatgttcgtttgcacctaagaatttctc 17551063  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 17502342 - 17502279
Alignment:
Q  167 tttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttccagagagac 230  Q
    ||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||| ||||||    
T  17502342 tttagaggaaagaaggaagaattctaaaacaatattgatgctgcatttttgtttccacagagac 17502279  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 17508159 - 17508222
Alignment:
Q  167 tttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttccagagagac 230  Q
    ||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||| ||||||    
T  17508159 tttagaggaaagaaggaagaattctaaaacaatattgatgctgcatttttgtttccacagagac 17508222  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 17545055 - 17544992
Alignment:
Q  167 tttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttccagagagac 230  Q
    ||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||| ||||||    
T  17545055 tttagaggaaagaaggaagaattctaaaacaatattgatgctgcatttttgtttccacagagac 17544992  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 17550872 - 17550935
Alignment:
Q  167 tttagagaaaagaaggaagaattctaaaacaacattgttgctgtgtttttgtttccagagagac 230  Q
    ||||||| |||||||||||||||||||||||| |||| |||||  |||||||||||| ||||||    
T  17550872 tttagaggaaagaaggaagaattctaaaacaatattgatgctgcatttttgtttccacagagac 17550935  T

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