View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_30 (Length: 393)
Name: NF7636_high_30
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 42342803 - 42343179
Alignment:
| Q |
1 |
taatgtcttttatgttcatattttattcgcaaaccaagatcaataagtaaaatcctattaatagcagggagagagagattagttatttgattattatttc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342803 |
taatgtcttttatgttcatattttattcgcaaagcaagatcaataagtaaaatcctattaatagcagggagagagagattagttatttgattattatttc |
42342902 |
T |
|
| Q |
101 |
caacagtctgaataaacaaagatttttccactttaatggtcaaagattgttccgatgcataacaactacttctttcaatctatggtgacttctttgacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42342903 |
caacagtctgaataaacaaagatttttccactttaatggtcaaagattgttccgatgcataacaactacttctttcaatctatggtgacttctttgacct |
42343002 |
T |
|
| Q |
201 |
cgataatgcaataagctactcttnnnnnnntaatagaaaatgtaacatattgcattgcattgtaggtcatctattgtaccaaggacatgcttacgcgttc |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42343003 |
cgataatgcaataagctactcttaaaaaaataatagaaaatgtaacatattgcattgcattgtaggtcatctattgtaccaaggacatgcttacgcattc |
42343102 |
T |
|
| Q |
301 |
actttgggatgtaatgcatacaacacaagagattttagaagaggtcaaggtagaattttttgaacaccaagtgatgt |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42343103 |
actttgggatgtaatgcatacaacacaagagagtttagaagaggtcaaggtagaattttttgaacaccaagtgatgt |
42343179 |
T |
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