View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_33 (Length: 378)

Name: NF7636_high_33
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_33
NF7636_high_33
[»] scaffold1118 (1 HSPs)
scaffold1118 (17-368)||(1904-2264)
[»] scaffold1801 (1 HSPs)
scaffold1801 (67-357)||(774-1088)
[»] chr6 (2 HSPs)
chr6 (130-357)||(14316016-14316243)
chr6 (220-355)||(9884380-9884512)
[»] scaffold0902 (3 HSPs)
scaffold0902 (67-226)||(1749-1915)
scaffold0902 (321-353)||(1991-2023)
scaffold0902 (250-284)||(1956-1990)
[»] scaffold1652 (1 HSPs)
scaffold1652 (246-335)||(1251-1340)
[»] chr2 (1 HSPs)
chr2 (220-355)||(20421403-20421535)
[»] chr5 (1 HSPs)
chr5 (220-344)||(135248-135368)
[»] chr7 (1 HSPs)
chr7 (255-357)||(36909893-36909998)
[»] scaffold0003 (1 HSPs)
scaffold0003 (220-344)||(112072-112193)
[»] chr1 (1 HSPs)
chr1 (220-355)||(15607193-15607325)


Alignment Details
Target: scaffold1118 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 1904 - 2264
Alignment:
Q  17 aaaactaaactaattttctcatttctgagacaaacttattaacagagttt---------aattatagtttctcatcatttaaaattatgcttagggcaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| ||||||||||    
T  1904 aaaactaaactaattttctcatttctgagacaaacttattaacagagtttgagtatgccaattatagtttctcatcatttaaaattatgattagggcaaa 2003  T
Q  108 agcaaggacttgaagatattgatacacattctcattctttcaaatgtacaacataccataatcaccgtacttatatcgtactactactgaaattacacta 207  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2004 agcaaggacttgaagatattgataaacattctcattctttcaaatgtacaacataccataatcaccgtacttatatagtactactactgaaattacacta 2103  T
Q  208 actagaaattacaaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactct 307  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  2104 actataaattacaaatacatttaaaattattcaccatatatagtaacaaaaccaaatcataacacaaattgtctaatcctaaacgaatcaaatgaactct 2203  T
Q  308 tttcaatttcgtggcaatggtttagagaaacccaaaatgcaaaaatactataaatttcatc 368  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  2204 tttcaatttcgtgacaatggtttagagaaacacaaaatgcaaaaatactataaatttcatc 2264  T

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Target: scaffold1801 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 67 - 357
Target Start/End: Complemental strand, 1088 - 774
Alignment:
Q  67 aattatagtttctcatcatttaaaattatgcttaggg-caaaagcaaggacttgaagatattgatacacattctcattctttcaaatgtacaacatacca 165  Q
    |||||||||||| |||||||||||||| || | |||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||    
T  1088 aattatagtttcccatcatttaaaattctgatcaggggcaaaagcaaggacttcaagatattgttacacattctcagtctttcaaatgtacaacatacca 989  T
Q  166 taatcaccgtact----tatatcgtactactactgaaattacactaactagaaattaca-------------------aatacatttaaaattattcacc 242  Q
    ||||||| |||||    |||||| |||||||||||||||||||||||||||||||| ||                   |||||||||||||| ||||| |    
T  988 taatcactgtacttgtgtatatcctactactactgaaattacactaactagaaatttcaaatacatatagtagtgaagaatacatttaaaatcattcatc 889  T
Q  243 atatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactcttttcaatttcgtggcaatggtttagagaaacccaa 342  Q
     |||||||||||||||||||||||||||||| |||||||||||  || | |||  ||||||||||||||||||||||| |||||||||||| ||||||||    
T  888 ttatatagtaacaaaaccaaaccataacacagatcgtctaatccgaatcaaatttaatgaactcttttcaatttcgtgacaatggtttagaaaaacccaa 789  T
Q  343 aatgcaaaaatacta 357  Q
    |||||||||||||||    
T  788 aatgcaaaaatacta 774  T

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Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 130 - 357
Target Start/End: Original strand, 14316016 - 14316243
Alignment:
Q  130 tacacattctcattctttcaaatgtacaacataccataatcaccgtacttatatcgtactactact-gaaattacactaact---agaaattacaaatac 225  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||| |||| |||||||| | |||||||||   ||    || | | |  |||||    
T  14316016 tacacattctcagtctttcatatgtacaacataccataatcactgtacttgtatcctactactattagaaattacaaatacataaagtagtgaagaatac 14316115  T
Q  226 atttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactcttttcaatttcgtggcaat 325  Q
    ||||||||||||||||    |||||||||||||||||||||||||| | ||| ||||||| | ||| |||||||||||||||||||||||||||||||||    
T  14316116 atttaaaattattcac----tatagtaacaaaaccaaaccataacatagatcttctaatccttaacaaatcaaatgaactcttttcaatttcgtggcaat 14316211  T
Q  326 ggtttagagaaacccaaaatgcaaaaatacta 357  Q
    |||||| |||||||| ||||||||||||||||    
T  14316212 ggtttaaagaaaccctaaatgcaaaaatacta 14316243  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 355
Target Start/End: Original strand, 9884380 - 9884512
Alignment:
Q  220 aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactctttt-caatttcg 318  Q
    |||||||||| |||| ||||||||||    | ||||||| ||||||||| |||| |||  |||||| ||||| || ||||||||  ||||| |||||||     
T  9884380 aaatacatttcaaatcattcaccata----gcaacaaaatcaaaccatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttct 9884475  T
Q  319 tggcaatggtttagagaaacccaaaatgcaaaaatac 355  Q
      |||||||||||||||||||||||||||||||||||    
T  9884476 cagcaatggtttagagaaacccaaaatgcaaaaatac 9884512  T

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Target: scaffold0902 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 1749 - 1915
Alignment:
Q  67 aattatagtttctcatcatttaaaattatgcttagg-gcaaaagcaaggacttgaagatattgata--------cacattctcattctttcaaatgtaca 157  Q
    ||||| |||||||||| |||||||||| || ||||| ||||||||||||||||||| |||||| ||        |||||||||  |||  ||||||||||    
T  1749 aattacagtttctcataatttaaaattctgattaggagcaaaagcaaggacttgaaaatattgttagtttgttacacattctcggtct--caaatgtaca 1846  T
Q  158 acataccataatcaccgtacttatatcgtactactactgaaattacactaactagaaattacaaataca 226  Q
    |||||||||||||||  ||||  |||| |||||||| || |||||||||||||||||||||||||||||    
T  1847 acataccataatcactatactcgtatcctactactattgtaattacactaactagaaattacaaataca 1915  T

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Target: scaffold0902; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 1991 - 2023
Alignment:
Q  321 gcaatggtttagagaaacccaaaatgcaaaaat 353  Q
    |||||||||||||||||||||||||||||||||    
T  1991 gcaatggtttagagaaacccaaaatgcaaaaat 2023  T

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Target: scaffold0902; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 1956 - 1990
Alignment:
Q  250 gtaacaaaaccaaaccataacacaaatcgtctaat 284  Q
    |||||||||||||||||||||||| ||||||||||    
T  1956 gtaacaaaaccaaaccataacacagatcgtctaat 1990  T

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Target: scaffold1652 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 1340 - 1251
Alignment:
Q  246 tatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactcttttcaatttcgtggcaatggtttagaga 335  Q
    ||||||||||||||||||| |||||| | |||||| |||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  1340 tatagtaacaaaaccaaacaataacatagatcgtccaatcctaaacaaatcaaatgaaatcttctcaatttcgtggcaatggtttagaga 1251  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 20421535 - 20421403
Alignment:
Q  220 aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactctttt-caatttcg 318  Q
    |||||||||| |||| ||||||||||    | ||||||| ||||| ||| |||| |||  |||||| ||||| || ||||||||  ||||| |||||||     
T  20421535 aaatacatttcaaatcattcaccata----gcaacaaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttct 20421440  T
Q  319 tggcaatggtttagagaaacccaaaatgcaaaaatac 355  Q
      |||||||||||||||||||||||||||||||||||    
T  20421439 cagcaatggtttagagaaacccaaaatgcaaaaatac 20421403  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 135368 - 135248
Alignment:
Q  220 aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactcttttcaatttcgt 319  Q
    |||||||||| |||| ||||||||||    | ||||||| ||||||||| |||| |||  |||||| ||||| || ||||| |||  ||||||||||       
T  135368 aaatacatttcaaatcattcaccata----gcaacaaaatcaaaccatatcacagatcaactaatcctaaacaaaacaaattaacctttttcaatttgtc 135273  T
Q  320 ggcaatggtttagagaaacccaaaa 344  Q
    |||||||||||||||||||||||||    
T  135272 ggcaatggtttagagaaacccaaaa 135248  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 36909893 - 36909998
Alignment:
Q  255 aaaaccaaaccataacacaaatcgtctaatcgta--aacgaatcaaatgaa-ctcttttcaatttcgtggcaatggtttagagaaacccaaaatgcaaaa 351  Q
    |||||||||||||| |||| |||  |||||| ||  ||| || |||||||| | |||||||||||| ||||||| ||||||| |||||||||||| ||||    
T  36909893 aaaaccaaaccatatcacagatcacctaatcctataaacaaaacaaatgaaacccttttcaatttcttggcaatagtttagaaaaacccaaaatgtaaaa 36909992  T
Q  352 atacta 357  Q
    ||||||    
T  36909993 atacta 36909998  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 112193 - 112072
Alignment:
Q  220 aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactctttt-caatttcg 318  Q
    |||||||||| |||| ||||||||||    | ||||||| ||||||||| |||| |||  |||||| ||||| || ||||| ||  ||||| ||||||      
T  112193 aaatacatttcaaatcattcaccata----gcaacaaaatcaaaccatatcacatatcaactaatcctaaacaaaacaaattaaacctttttcaatttat 112098  T
Q  319 tggcaatggtttagagaaacccaaaa 344  Q
     |||||||||||||||||||||||||    
T  112097 cggcaatggtttagagaaacccaaaa 112072  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 15607325 - 15607193
Alignment:
Q  220 aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaa-ctcttttcaatttcg 318  Q
    |||||||||| |||| ||||||||||    | ||||||| |||||||||  ||| |||  |||||| ||||| || |||||||| |  |||||||||||     
T  15607325 aaatacatttcaaatcattcaccata----gcaacaaaatcaaaccatattacagatcaactaatcctaaactaagcaaatgaaacatttttcaatttct 15607230  T
Q  319 tggcaatggtttagagaaacccaaaatgcaaaaatac 355  Q
    |||||||  |||||||||| ||||||| | |||||||    
T  15607229 tggcaataatttagagaaaaccaaaatacgaaaatac 15607193  T

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