View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7636_high_36 (Length: 369)
Name: NF7636_high_36
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 351
Target Start/End: Original strand, 1057905 - 1058251
Alignment:
| Q |
5 |
agtttggtgtttcttgcaaataaggtagctcctataaatcaacaaaacttgaatcaaagaaaaagtttgtctctccatgcaagtaagcaaagtcatcatc |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1057905 |
agtttagtgtttcttgcaaataaggtagctcctataaatcaacaaaacttgaatcaaagaaaaagtttgtctctccatgcaagtaagcaaagtcatcatc |
1058004 |
T |
|
| Q |
105 |
aatcaaacaaacttttgcacatagcttttattgtttgaaaaatttataaaaccctatatttaattttcttaaccctttatatattcttttaaattttgac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058005 |
aatcaaacaaacttttgcacatagcttttattgtttgaaaaatttataaaaccctatatttaattttcttaaccctttatatattcttttaaattttgac |
1058104 |
T |
|
| Q |
205 |
aattttgaagctcgttcataaaacaacaactatttgtacatcatgacactttttgtgtgttattccagaaggacaaagaagttgttagtaaagaaaggaa |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058105 |
aattttaaagctcgttcataaaacaacaactatttgtacatcatgacactttttgtgtgttattccagaaggacaaagaagttgttagtaaagaaaggaa |
1058204 |
T |
|
| Q |
305 |
ggatatggaaatggaaggaaatcgtgagaaagaggaaaccctacctc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058205 |
ggatatggaaatggaaggaaatcgtgagaaagaggaaaccctacctc |
1058251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University