View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_37 (Length: 364)
Name: NF7636_high_37
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 291
Target Start/End: Complemental strand, 6120441 - 6120165
Alignment:
| Q |
28 |
gaattgaagaagaaaaagtggattcaacattgttcaaacaaattgttggttta-----------tatatattttgcaatgggattaataagtaggtttat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
6120441 |
gaattgaagaagaaaaagtggattcaacattgttcaaacaaattgttggttcacttaggctagatatatattttgcaatgggattaataagtaggtttat |
6120342 |
T |
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| Q |
117 |
ggatgatcttagaagatctcgaatgaatgtagcaa--taagagaagacagatgcattgctagatcgttataagcacgttgaataattaatggaagtatgc |
214 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6120341 |
ggatgatcttagaagatctcgaatgaatgtagcaaaataagagaagacagatgcattgctagatcgttataagcacgttgaataattaatggaagtatgc |
6120242 |
T |
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| Q |
215 |
aacattgaggtatggaattatatttccaaaagttgcagaatagacagatgcattgctaatttgttttttctgatgct |
291 |
Q |
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| T |
6120241 |
aacattgaggtatggaattatatttccaaaagttgcagaatagacggatgcattgctaatttgttttttctgatgct |
6120165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 6120127 - 6120075
Alignment:
| Q |
315 |
tactgctggatatttct---ttcagtttcttggagcactaatctcttggtgtt |
364 |
Q |
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| T |
6120127 |
tactgctggatatttctaatttaagtttcttggagcactaatctcttggtgtt |
6120075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 201
Target Start/End: Original strand, 6120764 - 6120794
Alignment:
| Q |
171 |
tgctagatcgttataagcacgttgaataatt |
201 |
Q |
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| T |
6120764 |
tgctagatcgttataagcacgttgaataatt |
6120794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 35897868 - 35897911
Alignment:
| Q |
30 |
attgaagaagaaaaagtggattcaacattgttcaaacaaattgt |
73 |
Q |
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| T |
35897868 |
attgaagaagaaaaagtggattccacaatgttcagacaaattgt |
35897911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 3461020 - 3461063
Alignment:
| Q |
30 |
attgaagaagaaaaagtggattcaacattgttcaaacaaattgt |
73 |
Q |
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||||||||||||||||||||||| ||| |||||| ||||||||| |
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| T |
3461020 |
attgaagaagaaaaagtggattccacaatgttcagacaaattgt |
3461063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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