View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_41 (Length: 345)

Name: NF7636_high_41
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_41
NF7636_high_41
[»] chr8 (14 HSPs)
chr8 (17-345)||(39431642-39431991)
chr8 (176-345)||(13243060-13243229)
chr8 (177-308)||(36406506-36406637)
chr8 (244-344)||(34282878-34282978)
chr8 (177-308)||(3384036-3384167)
chr8 (177-308)||(24965012-24965131)
chr8 (177-308)||(28928038-28928158)
chr8 (177-338)||(31500812-31500976)
chr8 (244-293)||(27321882-27321931)
chr8 (182-313)||(8968314-8968440)
chr8 (177-238)||(27321925-27321986)
chr8 (177-238)||(38214738-38214799)
chr8 (182-238)||(21138133-21138189)
chr8 (244-313)||(21138070-21138139)
[»] chr5 (32 HSPs)
chr5 (177-345)||(16667462-16667630)
chr5 (181-338)||(21068980-21069137)
chr5 (177-344)||(12267379-12267546)
chr5 (177-344)||(17192639-17192806)
chr5 (177-308)||(33006874-33007005)
chr5 (177-308)||(34846334-34846465)
chr5 (177-308)||(35468869-35469001)
chr5 (177-293)||(43228663-43228779)
chr5 (184-343)||(15503902-15504049)
chr5 (213-338)||(767289-767410)
chr5 (181-308)||(15675284-15675411)
chr5 (177-293)||(7162104-7162220)
chr5 (177-293)||(32953688-32953804)
chr5 (177-293)||(16567770-16567886)
chr5 (178-344)||(13942749-13942918)
chr5 (177-293)||(1672507-1672623)
chr5 (244-308)||(30248999-30249063)
chr5 (177-291)||(37779643-37779757)
chr5 (244-344)||(36234552-36234652)
chr5 (177-288)||(37654767-37654878)
chr5 (177-308)||(34443945-34444064)
chr5 (182-262)||(9738356-9738436)
chr5 (180-251)||(13694817-13694888)
chr5 (213-291)||(37607472-37607550)
chr5 (177-238)||(2476383-2476444)
chr5 (177-238)||(6900752-6900813)
chr5 (276-344)||(8214633-8214701)
chr5 (246-313)||(7159602-7159669)
chr5 (177-288)||(37551937-37552048)
chr5 (247-289)||(42989571-42989613)
chr5 (180-251)||(13695032-13695103)
chr5 (240-308)||(15436024-15436091)
[»] chr2 (23 HSPs)
chr2 (177-338)||(25562903-25563064)
chr2 (236-344)||(17148808-17148915)
chr2 (249-344)||(12000563-12000658)
chr2 (245-344)||(17249354-17249453)
chr2 (177-344)||(304105-304258)
chr2 (177-308)||(13203747-13203866)
chr2 (249-338)||(15651247-15651336)
chr2 (244-308)||(6799902-6799966)
chr2 (244-308)||(18299159-18299223)
chr2 (247-338)||(33909328-33909419)
chr2 (177-308)||(22572717-22572836)
chr2 (244-344)||(41010510-41010610)
chr2 (244-308)||(41114886-41114950)
chr2 (182-313)||(34756664-34756795)
chr2 (244-308)||(29257401-29257465)
chr2 (177-238)||(2475802-2475863)
chr2 (177-238)||(6799960-6800021)
chr2 (224-313)||(13654785-13654874)
chr2 (177-238)||(41114944-41115005)
chr2 (244-307)||(15429213-15429276)
chr2 (225-290)||(19881534-19881599)
chr2 (297-338)||(45444452-45444493)
chr2 (176-228)||(18299227-18299279)
[»] chr7 (21 HSPs)
chr7 (180-344)||(3012280-3012444)
chr7 (177-331)||(41759602-41759756)
chr7 (177-344)||(28694021-28694187)
chr7 (177-308)||(35300445-35300576)
chr7 (204-344)||(4843298-4843438)
chr7 (177-293)||(7873240-7873356)
chr7 (224-344)||(38128974-38129094)
chr7 (177-344)||(19377362-19377529)
chr7 (177-308)||(26722955-26723086)
chr7 (177-293)||(5991440-5991553)
chr7 (177-344)||(21932760-21932914)
chr7 (177-290)||(22206709-22206822)
chr7 (177-290)||(22227917-22228030)
chr7 (177-338)||(814972-815121)
chr7 (224-308)||(23704486-23704570)
chr7 (236-336)||(42439563-42439663)
chr7 (244-344)||(21688149-21688249)
chr7 (177-293)||(25688210-25688326)
chr7 (244-304)||(38991181-38991241)
chr7 (204-285)||(5850727-5850808)
chr7 (244-293)||(30852377-30852426)
[»] chr6 (17 HSPs)
chr6 (177-344)||(2836181-2836348)
chr6 (177-308)||(15528914-15529045)
chr6 (177-308)||(9696023-9696154)
chr6 (180-308)||(9046932-9047060)
chr6 (217-308)||(2941230-2941321)
chr6 (176-308)||(15122010-15122142)
chr6 (177-308)||(34249030-34249149)
chr6 (245-322)||(339371-339448)
chr6 (244-308)||(23663776-23663840)
chr6 (245-308)||(1781039-1781102)
chr6 (177-263)||(34188770-34188856)
chr6 (177-262)||(28614434-28614519)
chr6 (244-308)||(10397809-10397873)
chr6 (246-292)||(14938943-14938989)
chr6 (177-238)||(23663834-23663895)
chr6 (177-237)||(2960664-2960724)
chr6 (177-237)||(10397868-10397928)
[»] chr4 (29 HSPs)
chr4 (177-308)||(4728526-4728657)
chr4 (177-338)||(25237544-25237705)
chr4 (204-344)||(2521912-2522051)
chr4 (177-344)||(41972418-41972573)
chr4 (177-308)||(46645571-46645702)
chr4 (246-344)||(49745076-49745174)
chr4 (183-308)||(10058511-10058636)
chr4 (177-293)||(14044325-14044441)
chr4 (177-308)||(2576139-2576271)
chr4 (223-344)||(36947532-36947653)
chr4 (177-293)||(9003536-9003651)
chr4 (177-293)||(9694067-9694183)
chr4 (244-308)||(31364170-31364234)
chr4 (246-344)||(52373775-52373873)
chr4 (246-338)||(8901840-8901931)
chr4 (177-308)||(4552165-4552284)
chr4 (177-293)||(11827047-11827162)
chr4 (244-344)||(50099875-50099975)
chr4 (222-313)||(31929043-31929134)
chr4 (244-308)||(10715690-10715755)
chr4 (244-308)||(10929460-10929525)
chr4 (244-308)||(40969259-40969323)
chr4 (177-236)||(50383868-50383927)
chr4 (177-308)||(2017454-2017573)
chr4 (177-238)||(32005894-32005955)
chr4 (180-238)||(1585692-1585750)
chr4 (180-241)||(15034545-15034606)
chr4 (213-313)||(41955229-41955329)
chr4 (250-295)||(50383929-50383974)
[»] chr1 (26 HSPs)
chr1 (177-308)||(14727297-14727428)
chr1 (177-322)||(48940419-48940564)
chr1 (177-308)||(31844637-31844768)
chr1 (177-308)||(6331653-6331784)
chr1 (177-308)||(8239258-8239391)
chr1 (177-338)||(9527024-9527173)
chr1 (206-344)||(24745410-24745546)
chr1 (177-308)||(27584030-27584149)
chr1 (245-344)||(24646088-24646187)
chr1 (177-308)||(25011553-25011672)
chr1 (177-308)||(27460675-27460794)
chr1 (244-345)||(34459143-34459244)
chr1 (244-344)||(4642051-4642151)
chr1 (177-307)||(25007443-25007561)
chr1 (177-311)||(44238872-44238995)
chr1 (177-308)||(37154007-37154126)
chr1 (177-308)||(44305391-44305510)
chr1 (244-338)||(6802083-6802181)
chr1 (276-345)||(49898442-49898511)
chr1 (177-238)||(1428455-1428516)
chr1 (177-236)||(4773986-4774045)
chr1 (177-238)||(4642145-4642206)
chr1 (254-288)||(4774051-4774085)
chr1 (276-313)||(3216119-3216156)
chr1 (204-241)||(33469013-33469050)
chr1 (182-238)||(6802175-6802231)
[»] chr3 (22 HSPs)
chr3 (177-308)||(7500929-7501060)
chr3 (177-344)||(41218352-41218519)
chr3 (178-308)||(37516616-37516746)
chr3 (177-293)||(26278336-26278452)
chr3 (204-308)||(26371038-26371142)
chr3 (177-338)||(33179111-33179260)
chr3 (244-338)||(53068282-53068376)
chr3 (178-293)||(35077198-35077313)
chr3 (177-307)||(53651883-53652001)
chr3 (177-308)||(44047569-44047688)
chr3 (182-344)||(41358595-41358758)
chr3 (177-238)||(12909805-12909866)
chr3 (177-308)||(25391841-25391960)
chr3 (177-308)||(28311262-28311381)
chr3 (244-293)||(53987904-53987953)
chr3 (245-313)||(38239494-38239562)
chr3 (177-308)||(14461050-14461169)
chr3 (177-238)||(43700229-43700290)
chr3 (244-292)||(9600390-9600438)
chr3 (177-238)||(44625683-44625744)
chr3 (244-302)||(47511667-47511725)
chr3 (275-308)||(12909899-12909932)
[»] scaffold0021 (2 HSPs)
scaffold0021 (177-338)||(109286-109447)
scaffold0021 (206-344)||(112198-112333)
[»] scaffold0638 (1 HSPs)
scaffold0638 (177-293)||(4078-4194)
[»] scaffold0075 (2 HSPs)
scaffold0075 (177-308)||(6890-7009)
scaffold0075 (244-308)||(11558-11622)
[»] scaffold0618 (1 HSPs)
scaffold0618 (244-308)||(1730-1794)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 39431991 - 39431642
Alignment:
Q  17 atcaaaccgttaagattacaagttgcgtaaatgcatgcagtatattaacaacttatgagttttaccgaatccgtacttataaatgtttgttattgaatat 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39431991 atcaaaccgttaagattacaagttgcgtaaatgcgtgcagtatattaacaacttatgagttttaccgaatccgtacttataaatgtttgttattaaatat 39431892  T
Q  117 ggatgttgaatctacaatatacctataggctccaggggcagagccaccaccccagctagc----------------------ctccaactttctttgtag 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||                      ||||||||||||||||||    
T  39431891 ggatgttgaatctacaatatacctataggctccaggggcagagccacc-ccccagctagcctgggcactagcccgggctcagctccaactttctttgtag 39431793  T
Q  195 caagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgcca 294  Q
    ||| || ||| ||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  39431792 caaacccttcaattacttgaacttttagcttttcttgcggatttacctgcggagttttgtgtaaattccgtaggaaacacatttcgtgcagattttgcca 39431693  T
Q  295 aagatttaggttcctaggtgaggtaatatcataggattttaggacccgcaa 345  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  39431692 aagatttaggttcctaggtgaggtaataccataggattttcggacccgcaa 39431642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 176 - 345
Target Start/End: Original strand, 13243060 - 13243229
Alignment:
Q  176 cctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacaca 275  Q
    ||||||||||| |||||||||||||   |||||| | |||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||||||    
T  13243060 cctccaactttttttgtagcaagcccagccattattagaacttttagcttttcctgcagatttatctgcggagttttgtgtaaattccgcaggaaacaca 13243159  T
Q  276 tttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgcaa 345  Q
    |||| || |||||||||||| |||||||||||| ||||||||||||| | ||||||||||||| ||||||    
T  13243160 tttcctgtagattttgccaaggatttaggttcccaggtgaggtaataccttaggattttaggatccgcaa 13243229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 36406637 - 36406506
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||    |||||||  || ||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||    
T  36406637 ctccaactttctttgtagcaagcccaaacattactataatttttagcttttcctgtggatttacctgcggatatttgtgtaaattccgtaggaaacacat 36406538  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| |||| |||||||    
T  36406537 ttcctgcagattttgccaaggattgaggttcc 36406506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 34282978 - 34282878
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgc 343  Q
    |||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||||||| ||||    
T  34282978 cggattttagtgtaaattctgcaggaaacacatttcctgcagattttgccaaggatttaagttccgaggtgaggtaataccataggattttaggatccgc 34282879  T
Q  344 a 344  Q
    |    
T  34282878 a 34282878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 3384167 - 3384036
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||| | | |||||| | ||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||  |||   ||    
T  3384167 ctccaactttctttgtagcaagtcctaccattattagaatttttagctttttctgcggatttacctgcggatttttgtgtaaattctgcaaaaaatgtat 3384068  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| || |||||||||||| ||||||||||||    
T  3384067 ttcatgtagattttgccaaggatttaggttcc 3384036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 24965012 - 24965131
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||| |||||||||||||||||||            |||||||||||||||||||||||||||||    
T  24965012 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcgga------------tttttgtgtaaattccgcaggaaacacat 24965099  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||| | ||||||||||||    
T  24965100 ttcctgcagattttgcctaggatttaggttcc 24965131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 28928038 - 28928158
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||||  |||||||| ||| ||||||||||||||||||| ||            ||||||||||||||||||||||||||    
T  28928038 ctccaactttctttgtagcaagcctaaccattactagaatttttagcttttcctgcggagtt------------ttgtgtaaattccgcaggaaacacat 28928125  T
Q  277 tt-cgtgcagattttgccaaagatttaggttcc 308  Q
    || | ||||||||||||||| ||||||||||||    
T  28928126 ttccctgcagattttgccaaggatttaggttcc 28928158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 338
Target Start/End: Complemental strand, 31500976 - 31500812
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||| ||    ||||||||  || ||||||||||| ||| |||||||| | ||||||| |||  |||||| |||||||||||||    
T  31500976 ctccaactttctttgtagca-gctccgccattactaaaatttttagctttttctgaggatttacttgcggatttatgt--aaattctgcaggaaacacat 31500880  T
Q  277 ttcgtgcagattttgccaaaga------tttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    ||| | | ||||||||||| ||      ||||| |||| ||||||||||||| | |||||||||||||    
T  31500879 ttcctacggattttgccaaggatttatgtttagattccaaggtgaggtaataccttaggattttagga 31500812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 27321931 - 27321882
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgcc 293  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  27321931 cggatttttatgtaaattccgcaggaaacacatttcctgcaaattttgcc 27321882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 8968314 - 8968440
Alignment:
Q  182 actttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgt 281  Q
    |||| |||||||||||| |   |||||||| |||| | |  ||||| |||||||||||||| ||||| || ||||||||||||||||||||      | |    
T  8968314 acttcctttgtagcaagtccagccattactagaacctatcactttttctgcggatttacctgcggatattggtgtaaattccgcaggaaac-----gcct 8968408  T
Q  282 gcagattttgccaaagatttaggttcctaggt 313  Q
    || ||||||||||| |||||||||||| ||||    
T  8968409 gcggattttgccaaggatttaggttcccaggt 8968440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 27321986 - 27321925
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||| |||||||||||||||||   ||||||||  ||||||||| |||||||||||||||    
T  27321986 ctccaattttctttgtagcaagcccagccattactaaaacttttagtttttcctgcggattt 27321925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 38214738 - 38214799
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||| ||||||||||||||| |   ||| |||| ||||||||||||||||||||||||||    
T  38214738 ctccaattttctttgtagcaagtccagccaatactagaacttttagcttttcctgcggattt 38214799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 21138189 - 21138133
Alignment:
Q  182 actttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    ||||||||||||||||||||  |||||||| |||| | | |||||||||||||||||    
T  21138189 actttctttgtagcaagcctaaccattactagaacctcttgcttttcctgcggattt 21138133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 21138139 - 21138070
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggt 313  Q
    |||||||  ||||||||| |||| ||||||| |||| |||  |||||||||| |||||||||||| ||||    
T  21138139 cggatttgggtgtaaatttcgcatgaaacacgtttcctgcgaattttgccaaggatttaggttcccaggt 21138070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 6e-62; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 177 - 345
Target Start/End: Complemental strand, 16667630 - 16667462
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||| |   |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16667630 ctccaactttctttgtagcaagtccagccattactagaacttttagcttttcctgcggatttacctgcggatttttgtgtaaattccgcaggaaacacat 16667531  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgcaa 345  Q
    ||| ||||||||||||||| |||||||||||| | ||||||||||| ||||||||||||||| ||||||    
T  16667530 ttcctgcagattttgccaaggatttaggttcccatgtgaggtaataccataggattttaggatccgcaa 16667462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 21068980 - 21069137
Alignment:
Q  181 aactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcg 280  Q
    |||||||||||||| |||||   |||||||| ||| ||||||| |||||||||||||||||| || ||||||||||| |||||||| ||||||||||||     
T  21068980 aactttctttgtagtaagcccaaccattactagaatttttagcctttcctgcggatttacctgcgcatttttgtgtatattccgcaagaaacacatttcc 21069079  T
Q  281 tgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  21069080 tgcagattttgccaaagatttaggttcctaggtgaggttataccataggattttagga 21069137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 12267546 - 12267379
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||||  | |||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||    
T  12267546 ctccaactttctttgtagcaagcctagcaattactagaacttttagcttttcctgtggatttacctgcggatttttatgtaaattccgcaagaaacacat 12267447  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| || |||||||||||   |||||| ||| |||||||||||||| ||||||||||||||| |||||    
T  12267446 ttcctgtagattttgccacgaatttagattcgtaggtgaggtaataccataggattttaggatccgca 12267379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 17192806 - 17192639
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||    |||||||| |||||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||| ||||    
T  17192806 ctccaactttctttgtagcaagctcagccattactagaacttttagctcttcctgcggatttaccggcggatttttgtgtcaattccgcaggaaatacat 17192707  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||||||||||| ||| |||||||||||| || |||||||||| ||| ||||||||||| |||||    
T  17192706 ttcctgcagattttgtcaaggatttaggttcccagatgaggtaataccattggattttaggatccgca 17192639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 33006874 - 33007005
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||| ||   ||||||||  |  |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  33006874 ctccaactttctttgtagcaaacccaaccattactaaattttttagcttttcctgcggatttacctgcggatttttgtgtaaattccgtaggaaacacat 33006973  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  33006974 ttcctgcagattttgccaaggatttaggttcc 33007005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 34846334 - 34846465
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||| |   |||||||| ||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  34846334 ctccaactttctttgtagcaagtcaaaccattactagaatttttagcttatcctgcggatttacctccggatttttgtgtaaattccgcagtaaacacat 34846433  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| | ||||||||||||| ||||||||||||    
T  34846434 ttcctacagattttgccaaggatttaggttcc 34846465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 35468869 - 35469001
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaactttt-agcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacaca 275  Q
    ||||||||||||||||||||||||   ||||| || ||| |||| ||||||| ||||||||||  || ||||||||||||||||||||||||||||||||    
T  35468869 ctccaactttctttgtagcaagcccaaccattgctagaattttttagctttttctgcggatttttctgcggatttttgtgtaaattccgcaggaaacaca 35468968  T
Q  276 tttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||| ||||||||||||||| ||||||||||||    
T  35468969 tttcctgcagattttgccaaggatttaggttcc 35469001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 43228779 - 43228663
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||   |||||||| |||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||||||||    
T  43228779 ctccaattttctttgtagcaagcccagccattactagaacttttagcttttcctacggatttacctgcggatgtttatgtaaattccgcaggaaacacat 43228680  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  43228679 ttcctgcagattttgcc 43228663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 343
Target Start/End: Original strand, 15503902 - 15504049
Alignment:
Q  184 tttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgc 283  Q
    ||||||||||||||||||  |||||||| ||| |||||||||||||||||||            ||||||||||||||| |||||||||||||||| |||    
T  15503902 tttctttgtagcaagcctaaccattactagaatttttagcttttcctgcgga------------tttttgtgtaaattctgcaggaaacacatttcctgc 15503989  T
Q  284 agattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgc 343  Q
    |||||||||||| |||||||||||| || |||||||||| ||||||||||||||| ||||    
T  15503990 agattttgccaaggatttaggttcccagatgaggtaataccataggattttaggatccgc 15504049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 767289 - 767410
Alignment:
Q  213 gaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctagg 312  Q
    ||||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||||||| | ||| ||||||||| ||||||| |||| |||    
T  767289 gaacttttagcttttcctgcggatttac----ggatttttgtataaattccgcaggaaacacatttcctacaggttttgccaaggatttagattcccagg 767384  T
Q  313 tgaggtaatatcataggattttagga 338  Q
    |||||||||| | |||||||||||||    
T  767385 tgaggtaataccttaggattttagga 767410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 15675284 - 15675411
Alignment:
Q  181 aactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcg 280  Q
    |||||||||||| |||| ||   |||||||| ||| ||||| ||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||     
T  15675284 aactttctttgttgcaaacccaaccattactagaatttttaactttttctgcggatttacctgcggagttttgtgtaaattccgcaggaaacacatttcc 15675383  T
Q  281 tgcagattttgccaaagatttaggttcc 308  Q
    ||||||||||||||| |||||| |||||    
T  15675384 tgcagattttgccaaggatttaagttcc 15675411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 7162220 - 7162104
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||   ||||||||  || ||||||||||||||||||||||||||  |||||||| |||||||||| ||||||||||||    
T  7162220 ctccaattttctttgtagcaagcccagccattactaaaaattttagcttttcctgcggatttacctgaggatttttatgtaaattccacaggaaacacat 7162121  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  7162120 ttcctgcagattttgcc 7162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 32953804 - 32953688
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||   |||||||| |||||||||||||||||| ||||||||||| |  |||||| ||||||||||| |||||||||||    
T  32953804 ctccaattttctttgtagcaagcccagccattactagaacttttagcttttcctacggatttacctgcaaatttttatgtaaattccgtaggaaacacat 32953705  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  32953704 ttcctgcagattttgcc 32953688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 16567770 - 16567886
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| ||||||||||||||| |   |||||||| |||||||||||||||| ||||||||||||| || ||| || |||||||| ||||||||||||||    
T  16567770 ctccaattttctttgtagcaagtccagccattactagaacttttagcttttcttgcggatttacctgcgaattgttatgtaaatttcgcaggaaacacat 16567869  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| | |||||||||||    
T  16567870 ttcctacagattttgcc 16567886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 344
Target Start/End: Complemental strand, 13942918 - 13942749
Alignment:
Q  178 tccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaa---cac 274  Q
    |||||||||||||||||||| ||   || ||||| ||||||| |||||||||| | ||||||||| | |||||||||||| ||||| ||  |||   |||    
T  13942918 tccaactttctttgtagcaaacccagcctttactagaactttgagcttttcctaccgatttacctgcagatttttgtgtagattccacaataaacaccac 13942819  T
Q  275 atttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||||| ||||||||||||||| ||||||| ||   ||||||||||||| | ||||||||||||| |||||    
T  13942818 atttcctgcagattttgccaaggatttagattatcaggtgaggtaataccttaggattttaggatccgca 13942749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 1672623 - 1672507
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||| ||   |||||||| ||||||||| | |||||||||||||||||| || |||||| |||| ||||||||||||||| ||    
T  1672623 ctccaattttctttgtagcaatcccaaccattactagaacttttatcctttcctgcggatttacctgcgaatttttatgtacattccgcaggaaacatat 1672524  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||  |||||||||||||    
T  1672523 tttctgcagattttgcc 1672507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 30248999 - 30249063
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  30248999 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 30249063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 37779643 - 37779757
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||     |||||||| |||||||||| |||| |||||||||||||| || || ||| ||||||||||| | |||||||||    
T  37779643 ctccaattttctttgtagcaagttcagccattactagaacttttagttttttctgcggatttacctgcgaatatttatgtaaattccgtatgaaacacat 37779742  T
Q  277 ttcgtgcagattttg 291  Q
    ||| |||||||||||    
T  37779743 ttcctgcagattttg 37779757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 36234652 - 36234552
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgc 343  Q
    ||||||||| ||||||||| ||||||||| |||||| |||||||||| |||| | |||| ||||||||||||||| ||| ||||  ||||||||| ||||    
T  36234652 cggatttttatgtaaattcagcaggaaacgcatttcctgcagattttaccaagggtttaagttcctaggtgaggtgataccataacattttaggatccgc 36234553  T
Q  344 a 344  Q
    |    
T  36234552 a 36234552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 37654767 - 37654878
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| ||||||| ||||||| |   | |||||| ||||||||| |||||||||||||||||||| || ||| || ||||||||||  |||||||||||    
T  37654767 ctccaattttctttctagcaagtccagctattactagaacttttatcttttcctgcggatttacctgcgaattgttatgtaaattccataggaaacacat 37654866  T
Q  277 ttcgtgcagatt 288  Q
    ||| ||||||||    
T  37654867 ttcctgcagatt 37654878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 34443945 - 34444064
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||| | |||||||| ||| || ||||||||||||            ||||||||||| ||||||||||| ||||  |||    
T  34443945 ctccaactttctttgtagcaagccctaccattactagaatttgtagcttttcctg------------cggatttttgtctaaattccgcaagaaatgcat 34444032  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  34444033 ttcctgcagattttgccaaggatttaggttcc 34444064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 9738356 - 9738436
Alignment:
Q  182 actttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattc 262  Q
    |||||||||| ||||||||   |||||||| |||||| | || |||||||||||||||||| | |||||||||||||||||    
T  9738356 actttctttgaagcaagcccaaccattactagaacttctcgcatttcctgcggatttacctgcagatttttgtgtaaattc 9738436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 13694817 - 13694888
Alignment:
Q  180 caactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttt 251  Q
    |||||||||||||||||||||  ||||||||| |||||| | |||||||||| ||||||| || ||||||||    
T  13694817 caactttctttgtagcaagcccatccattactagaacttctcgcttttcctgtggatttatctgcggatttt 13694888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 291
Target Start/End: Original strand, 37607472 - 37607550
Alignment:
Q  213 gaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttg 291  Q
    |||||||||| |||| |||||||||||||| |  || ||| ||||||||||| | |||||||||||| |||||||||||    
T  37607472 gaacttttagttttttctgcggatttacctgcaaatatttatgtaaattccgtatgaaacacatttcctgcagattttg 37607550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 2476383 - 2476444
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||| ||||||||||||||| | | |||||||| ||| ||||||||||||||||||||||    
T  2476383 ctccaattttctttgtagcaagtcctaccattactagaatttttagcttttcctgcggattt 2476444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 6900752 - 6900813
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||||||||||||||||||||    |||||||| |||||||||||||||||||| |||||    
T  6900752 ctccaactttctttgtagcaagctcagccattactagaacttttagcttttcctgcagattt 6900813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 8214701 - 8214633
Alignment:
Q  276 tttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    |||| ||||||||||| ||| ||||||||||| ||||||||||||||   ||||||||||||| |||||    
T  8214701 tttcctgcagattttgtcaaggatttaggttcttaggtgaggtaatactttaggattttaggatccgca 8214633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 7159669 - 7159602
Alignment:
Q  246 gatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggt 313  Q
    |||||| ||||| |||||||||||||||| |||| ||| |||||||||||  ||||||||| ||||||    
T  7159669 gattttggtgtacattccgcaggaaacacgtttcctgcggattttgccaagaatttaggtttctaggt 7159602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 37551937 - 37552048
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| ||||||| ||||||| |   | |||||| ||||||||| ||||||||||||| |||||| || ||| || |||||||| |  |||||||||||    
T  37551937 ctccaattttctttctagcaagtccagctattactagaacttttatcttttcctgcggagttacctgcgaattgttatgtaaatttcataggaaacacat 37552036  T
Q  277 ttcgtgcagatt 288  Q
    ||| || |||||    
T  37552037 ttcctgtagatt 37552048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 42989571 - 42989613
Alignment:
Q  247 atttttgtgtaaattccgcaggaaacacatttcgtgcagattt 289  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  42989571 atttttgtgtaaattccgcaggaaacacatttcctgcggattt 42989613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 13695032 - 13695103
Alignment:
Q  180 caactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttt 251  Q
    |||||||||||||||||||    ||||||||| |||||| | |||||||||| |||||||||| | ||||||    
T  13695032 caactttctttgtagcaagttcatccattactagaacttctcgcttttcctgtggatttacctgcagatttt 13695103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 308
Target Start/End: Original strand, 15436024 - 15436091
Alignment:
Q  240 cctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||||||||||||  || ||||||||||||||||| ||||| ||| ||||||||| | ||||||| ||||    
T  15436024 cctacggattttaatgaaaattccgcaggaaaca-atttcctgcggattttgcctaggatttagattcc 15436091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 177 - 338
Target Start/End: Original strand, 25562903 - 25563064
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||| || |||||| || |||||||||||||||||| ||||    
T  25562903 ctccaactttctttgtagcaagcccaaccattactagaacttttagcttttcctgcggatttatctgcggattgttttgtaaattccgcaggaaatacat 25563002  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    ||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  25563003 ttcctgcagattttgccaaggatttaggttcccaggtgaggtaataccataggattttagga 25563064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 17148808 - 17148915
Alignment:
Q  236 tttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggatttta 335  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||| |||||||| |||| ||||||||||||    
T  17148808 tttacctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttg-caaggatttaggttcccaggtgagggaataccataggatttta 17148906  T
Q  336 ggacccgca 344  Q
    ||| |||||    
T  17148907 ggatccgca 17148915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 249 - 344
Target Start/End: Original strand, 12000563 - 12000658
Alignment:
Q  249 ttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||||||||||| | ||||||||||||| |||||    
T  12000563 ttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatataggtccctaggtgaggtaataccttaggattttaggatccgca 12000658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 17249354 - 17249453
Alignment:
Q  245 ggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||  ||||||||||||| | ||||||||||||| |||||    
T  17249354 ggatttttgtgtaaattccacaggaaacacatttcttgtagattttgccaaggatttaggttctcaggtgaggtaataccttaggattttaggatccgca 17249453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 304258 - 304105
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||    |||||||| ||||||||||||||||||||||| ||              ||||||||| ||||||||||||||    
T  304258 ctccaactttctttgtagcaagctcagccattactagaacttttagcttttcctgcggagtt--------------gtgtaaatttcgcaggaaacacat 304173  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||||||||||||||| |||||||||||| | ||||||||| | |||| |||||||||| |||||    
T  304172 ttcttgcagattttgccaaggatttaggttcccatgtgaggtaacaccataagattttaggatccgca 304105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 13203747 - 13203866
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||| |||||||||||||||||||            ||||||||||||||||||||||||||| |    
T  13203747 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcgga------------tttttgtgtaaattccgcaggaaacacgt 13203834  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  13203835 ttcctgcagattttgccaaggatttaggttcc 13203866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 15651247 - 15651336
Alignment:
Q  249 ttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||| |||||||||||||||  | |||||||||||||    
T  15651247 ttttgtgtaaattccgcaggaaacacatttcctgcgtattttgccaaggatttaggtccctaggtgaggtaatgccttaggattttagga 15651336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 6799966 - 6799902
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  6799966 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 6799902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 18299223 - 18299159
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  18299223 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 18299159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 33909419 - 33909328
Alignment:
Q  247 atttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    ||||||||| |||||| |||||| | ||||||| |||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||    
T  33909419 atttttgtgaaaattctgcaggagaaacatttcctgcagatttttccaaagatttaggttctcaggtgaggtaataccataggattttagga 33909328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 22572836 - 22572717
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||||  |||||||| |||  |||||||||||||||| ||||            ||||||||||||| ||||||||||||    
T  22572836 ctccaactttctttgtagcaagcctaaccattactagaatatttagcttttcctgcgaattt------------ttgtgtaaattccccaggaaacacat 22572749  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  22572748 ttcctgcagattttgccaaggatttaggttcc 22572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 41010510 - 41010610
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgc 343  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||| | || |||||||||||| | ||||||||||| || | |||||||||| ||||    
T  41010510 cggatttttgtataaattctgcaggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccacaagattttaggatccgc 41010609  T
Q  344 a 344  Q
    |    
T  41010610 a 41010610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 41114950 - 41114886
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  41114950 cggattttcgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 41114886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 34756664 - 34756795
Alignment:
Q  182 actttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgt 281  Q
    ||||||||||||||||| |   || ||||| |||| | |  |||||||||||||||||||| | |||||| |||||||||||| ||||| ||| |||| |    
T  34756664 actttctttgtagcaagtccggccgttactagaacctctcacttttcctgcggatttacctgcagattttggtgtaaattccgtaggaatcacgtttcct 34756763  T
Q  282 gcagattttgccaaagatttaggttcctaggt 313  Q
    |  ||||||||||| |||||||||||| ||||    
T  34756764 gtggattttgccaaggatttaggttcccaggt 34756795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 29257401 - 29257465
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||||| |||||    
T  29257401 cggatttttgtgtaaatttcgcaggaaacacatttcctgcagattttgccaagaatttacgttcc 29257465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 2475802 - 2475863
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||||||||||||||| |||||   |||||||| ||||||||||||| || |||||||||    
T  2475802 ctccaactttctttgtaggaagcccagccattactagaacttttagcttgtcttgcggattt 2475863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 6800021 - 6799960
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||||||||||||||||||||    |||||||| ||| ||||| ||||||||||||||||    
T  6800021 ctccaactttctttgtagcaagctcaaccattactagaatttttaacttttcctgcggattt 6799960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 13654874 - 13654785
Alignment:
Q  224 ttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggt 313  Q
    ||||||||||||||||||||||| |||  ||  |||| || |||||||   ||||| ||| ||||||||||| |||||||||||| ||||    
T  13654874 ttttcctgcggatttacctacgggtttaagttaaaataccacaggaaaacgatttcctgcggattttgccaaggatttaggttcccaggt 13654785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 41115005 - 41114944
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||||||||||||||||||||    |||||||| ||| |||||| |||||||||||||||    
T  41115005 ctccaactttctttgtagcaagctcaaccattactagaatttttagtttttcctgcggattt 41114944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 15429213 - 15429276
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttc 307  Q
    |||||||| |||||||||||||||||||||  |||| ||  ||||||| ||| |||||||||||    
T  15429213 cggattttggtgtaaattccgcaggaaacatgtttcctgtggattttgtcaaggatttaggttc 15429276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 19881599 - 19881534
Alignment:
Q  225 tttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagatttt 290  Q
    |||||||||||||||||| ||  |||  ||| |||||||||| ||||||| |||| ||||||||||    
T  19881599 tttcctgcggatttacctgcgattttaggtgaaaattccgcatgaaacacgtttcctgcagatttt 19881534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 45444493 - 45444452
Alignment:
Q  297 gatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  45444493 gatttaggttcacaggtgaggtaataccataggattttagga 45444452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 18299279 - 18299227
Alignment:
Q  176 cctccaactttctttgtagcaagcctttccattacttgaacttttagcttttc 228  Q
    |||||||||||||||||||||||||   |||||||| ||| ||||| ||||||    
T  18299279 cctccaactttctttgtagcaagcccaaccattactagaatttttaacttttc 18299227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 180 - 344
Target Start/End: Original strand, 3012280 - 3012444
Alignment:
Q  180 caactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttc 279  Q
    |||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||    
T  3012280 caactttctttgtagcaagcccaaccattactagaacttttagcttttcctgcggatttacctgccgatttttgtgtacattccgcaggaaacacacttc 3012379  T
Q  280 gtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
     ||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||| |||||    
T  3012380 ctgcagattttgccaaggatataggttcccaggtgaggtaataccataggattttaggatccgca 3012444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 177 - 331
Target Start/End: Complemental strand, 41759756 - 41759602
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| |||||||||||||||| ||| ||||||| |  ||||||| ||||||||||||||||||||||||    
T  41759756 ctccaactttctttgtagcaagcccagccattactagaacttttagcttttcttgcagatttacttgtggattttggtgtaaattccgcaggaaacacat 41759657  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggat 331  Q
    ||| ||||||||||||||| |||||||||||| || |||||||| | ||||||||    
T  41759656 ttcctgcagattttgccaaggatttaggttccgagttgaggtaacaccataggat 41759602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 28694187 - 28694021
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||     |||||||| ||||||| | |||| ||| |||||||| || ||||||||||||||||||| |||||||||||||    
T  28694187 ctccaactttctttgtagcaagttccgccattactagaactttaaactttgcct-cggatttagctgcggatttttgtgtaaattctgcaggaaacacat 28694089  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  28694088 ttcctgcagattttgcccaggatttaggttcccaggtgaggtaataccataggattttaggatccgca 28694021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 35300576 - 35300445
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||| | |||||||| |||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||    
T  35300576 ctccaactttctttgtagcaagccctaccattactagaatgtttagcttttcctgcggatttacctgcggatttttgtgtaaattccgcaggaaatgtat 35300477  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  35300476 ttcctgcagattttgccaaggatttaggttcc 35300445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 204 - 344
Target Start/End: Original strand, 4843298 - 4843438
Alignment:
Q  204 ccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttag 303  Q
    ||||| || |||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||||||||| |||||||    
T  4843298 ccatttctagaacttttagcttttccttcggatttacctacggatatttgtgtacattccgcatgaaacacatttcatgcagattttgccaaggatttag 4843397  T
Q  304 gttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||||| |||||||||||||   | ||||||||||| |||||    
T  4843398 gttcccaggtgaggtaatacattgggattttaggatccgca 4843438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 7873356 - 7873240
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||   |||||||| ||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||||||||    
T  7873356 ctccaattttctttgtagcaagcccaaccattactagaacttttagctttttctgcggatttacctgcgggtttttatgtaaattccgcaggaaacacat 7873257  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  7873256 ttcctgcagattttgcc 7873240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 344
Target Start/End: Complemental strand, 38129094 - 38128974
Alignment:
Q  224 ttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatat 323  Q
    ||||||||| | ||||||| ||||||||||||||||||| | |||||||||||||| |||| |||||||||| |||||||||||| |||||||| |||||    
T  38129094 ttttcctgcagttttacctgcggatttttgtgtaaattctgaaggaaacacatttcctgcatattttgccaaggatttaggttcccaggtgaggcaatat 38128995  T
Q  324 cataggattttaggacccgca 344  Q
    ||||||||||||||| |||||    
T  38128994 cataggattttaggatccgca 38128974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 344
Target Start/End: Original strand, 19377362 - 19377529
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||| |||  |   |||||||| | | ||||| |||||| ||| ||||||||| ||||| |||||| |||||||| |||||| ||||    
T  19377362 ctccaactttctttgtaacaactccagccattactagtagttttaacttttcttgcagatttacctgcggatgtttgtggaaattccgaaggaaatacat 19377461  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| |||||    
T  19377462 ttcctgcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatccgca 19377529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 26723086 - 26722955
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||| ||||||||||  |   |||||||| ||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||    
T  26723086 ctccaactttttttgtagcaaatccaaccattactagaaattttagcttttcctacggatttacctgcggatttttatgtaaattccgcaggaaacacat 26722987  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||| ||| ||||||||||||    
T  26722986 ttcctgcagattttgtcaaggatttaggttcc 26722955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 5991553 - 5991440
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||   |||||||| |||||||||| ||||||||||||||||||| |||   ||| |||||||||||||||||||||||    
T  5991553 ctccaattttctttgtagcaagcccagccattactagaacttttagtttttcctgcggatttacctgcgg---tttatgtaaattccgcaggaaacacat 5991457  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  5991456 ttcctgcagattttgcc 5991440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 21932914 - 21932760
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   ||||||||  |||||||| |||||||||||             || |||||||||||||||||||||||||||    
T  21932914 ctccaactttctttgtagcaagcccaaccattactaaaacttttaacttttcctgcg-------------atatttgtgtaaattccgcaggaaacacat 21932828  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||||||||||| ||| |||||||||| | ||||||||||||| ||||||||||| ||| |||||    
T  21932827 ttcctgcagattttgtcaaggatttaggtttccaggtgaggtaataccataggatttttggatccgca 21932760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 22206822 - 22206709
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||    |||||||  || |||||||||||||||||||||||||||||  | ||| |||||||||||||||||||||||    
T  22206822 ctccaattttctttgtagcaagcccaggcattactataatttttagcttttcctgcggatttacctacgagtgtttatgtaaattccgcaggaaacacat 22206723  T
Q  277 ttcgtgcagatttt 290  Q
    ||| ||||||||||    
T  22206722 ttcctgcagatttt 22206709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 22227917 - 22228030
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||    |||||||  || |||||||||||||||||||||||||||||  | ||| |||||||||||||||||||||||    
T  22227917 ctccaattttctttgtagcaagcccaggcattactataatttttagcttttcctgcggatttacctacgagtgtttatgtaaattccgcaggaaacacat 22228016  T
Q  277 ttcgtgcagatttt 290  Q
    ||| ||||||||||    
T  22228017 ttcctgcagatttt 22228030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 338
Target Start/End: Complemental strand, 815121 - 814972
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||  ||  |||||||| ||||||||||||||||||            ||||||||||||||||||||||||| ||| ||||    
T  815121 ctccaactttctttgtagcaaatctagccattactagaacttttagcttttcct------------acggatttttgtgtaaattccgcagaaaatacat 815034  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    ||| |||||||||||||||  ||||||||||| | ||||||||||| | ||| |||||||||    
T  815033 ttcttgcagattttgccaagaatttaggttcccaagtgaggtaataccttagaattttagga 814972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 224 - 308
Target Start/End: Complemental strand, 23704570 - 23704486
Alignment:
Q  224 ttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||||||||||||||  ||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||    
T  23704570 ttttcctgcggatttacctgtggatttttgtgtaaattccgccgaaaacacatttcctgcagattttgccaaggatttaggttcc 23704486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 236 - 336
Target Start/End: Complemental strand, 42439663 - 42439563
Alignment:
Q  236 tttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggatttta 335  Q
    ||||||| | || ||||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||||| ||||||||| ||||| ||||||    
T  42439663 tttacctgcagagttttgtgtaaatttcgcaggaaacacattttctgcagattttgccaaggatttaggttcctaggagaggtaataccatagaatttta 42439564  T
Q  336 g 336  Q
    |    
T  42439563 g 42439563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 21688149 - 21688249
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgc 343  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||   ||||||| ||||| | |||||||||| || ||||    
T  21688149 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgcgaaggatttaggttatcaggtgagataataccttaggattttaagatccgc 21688248  T
Q  344 a 344  Q
    |    
T  21688249 a 21688249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 25688326 - 25688210
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| ||||||||||||||||    ||||||||  ||||||||||||||||||| ||||||||| |  || ||| |||||||||||||||||||| ||    
T  25688326 ctccaattttctttgtagcaagctcagccattactaaaacttttagcttttcctgcagatttacctgcaaatgtttatgtaaattccgcaggaaacatat 25688227  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  25688226 ttcctgcagattttgcc 25688210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 38991241 - 38991181
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttagg 304  Q
    ||||||||||| |||||||||  ||||||||||||| ||||||||||||||| ||||||||    
T  38991241 cggatttttgtataaattccgttggaaacacatttcctgcagattttgccaaggatttagg 38991181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 5850727 - 5850808
Alignment:
Q  204 ccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcag 285  Q
    |||||||| ||| ||||| ||||||||||||||||| || | || | |||||||||||| |||| ||||||||||| |||||    
T  5850727 ccattactagaagttttaacttttcctgcggatttatctgcagaatgttgtgtaaattctgcagaaaacacatttcctgcag 5850808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 30852377 - 30852426
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgcc 293  Q
    |||| |||| |||||||||||||||||||||||||| | |||||||||||    
T  30852377 cggaattttatgtaaattccgcaggaaacacatttccttcagattttgcc 30852426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 2836348 - 2836181
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||| ||   ||||| || ||||||||||||||| ||||||||| | || |||||||| ||||||||||||||||||| ||||    
T  2836348 ctccaactttctttgtagcaaacccaaccattcctagaacttttagctttttctgcggattgatctgcggattttcgtgtaaattccgcaggaaatacat 2836249  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||||||||||| ||| |||||||||||| ||||||||||||| ||||||||||||||| |||||    
T  2836248 ttcctgcagattttgtcaaggatttaggttcccaggtgaggtaataccataggattttaggatccgca 2836181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 15528914 - 15529045
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||| | |||||| | ||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||   ||    
T  15528914 ctccaactttctttgtagcaagccctaccattattagaatttttagcttttcctgcggatttacctgcggatgtttgtgtaaattccgcaggaaatgtat 15529013  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  15529014 ttcctgcagattttgccaaggatttaggttcc 15529045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 9696023 - 9696154
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||    ||||| | ||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| ||    
T  9696023 ctccaactttctttgtagcaagcccaatcattattagaatttttagattttcctgcggatttacctgcagatttttgtgtaaattccgcaggaaacatat 9696122  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  9696123 ttcctgcagattttgccaaggatttaggttcc 9696154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 9047060 - 9046932
Alignment:
Q  180 caactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttc 279  Q
    ||||||||||||||| ||| |   |||||||| ||| ||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||    
T  9047060 caactttctttgtagtaagtccaaccattactagaatttttagcttttcctgcggatttacctgtagatttttgtgtagattccgcaggaaacacatttc 9046961  T
Q  280 gtgcagattttgccaaagatttaggttcc 308  Q
     ||||||||||| ||| ||||||||||||    
T  9046960 ctgcagattttgtcaaggatttaggttcc 9046932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 2941230 - 2941321
Alignment:
Q  217 ttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  2941230 ttttatcttttcctgcggatttacctgcggattttagtgtaaatttcgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 2941321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 15122010 - 15122142
Alignment:
Q  176 cctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacaca 275  Q
    ||||||| ||||||||||| || || |  ||||| | ||| ||||||||||| |||||||||||||| ||||||| ||| ||||||| ||||||||||||    
T  15122010 cctccaattttctttgtagaaaaccctatcattattagaatttttagctttttctgcggatttacctgcggatttgtgtctaaattctgcaggaaacaca 15122109  T
Q  276 tttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||| ||||||||||||||| |||||| |||||    
T  15122110 tttcctgcagattttgccaaggatttacgttcc 15122142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 34249149 - 34249030
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||||||||||||            |||||||||||| |||||||||||||    
T  34249149 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggattt------------ttgtgtaaattctgcaggaaacacat 34249062  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| | ||||||||||    
T  34249061 ttcctgcagattttgccaagggtttaggttcc 34249030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 339371 - 339448
Alignment:
Q  245 ggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaata 322  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||| |||| |||||||||||| |||||||||||||    
T  339371 ggatttttgtgtaaattccgtaggaaatacatttcctgcagattttaccaaggatttaggttcccaggtgaggtaata 339448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 23663840 - 23663776
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  23663840 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttatgttcc 23663776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 1781102 - 1781039
Alignment:
Q  245 ggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||    
T  1781102 ggatttttgtgtaaattcctcaggaaacacatttcctgcagattttgccaaggatttaggttcc 1781039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 34188770 - 34188856
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattcc 263  Q
    ||||||||||||||||||||||||   |||||||| ||||||| | ||||||||||||||||||||||| || ||||| ||||||||    
T  34188770 ctccaactttctttgtagcaagcccagccattactagaactttcaacttttcctgcggatttacctacgaatgtttgtataaattcc 34188856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 28614519 - 28614434
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattc 262  Q
    |||||| | ||||||||||||||||  |||||||| ||||||||| |||||||| ||||||||||| ||||||||| |||||||||    
T  28614519 ctccaattatctttgtagcaagcctagccattactagaacttttaacttttcctacggatttacctgcggatttttatgtaaattc 28614434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 308
Target Start/End: Complemental strand, 10397873 - 10397809
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||    
T  10397873 cggattgttgtgtaaattccgcaggaaacacatttcctgcatattttgccaaggatttaggttcc 10397809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 292
Target Start/End: Complemental strand, 14938989 - 14938943
Alignment:
Q  246 gatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgc 292  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  14938989 gatttttatgtaaattccgcaggaaacacatttcctgcagattttgc 14938943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 23663895 - 23663834
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    ||||||||||||||||||||||||   ||||| ||  || ||||||||||||||||||||||    
T  23663895 ctccaactttctttgtagcaagcccaaccattgctataatttttagcttttcctgcggattt 23663834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 2960664 - 2960724
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatt 237  Q
    |||||| ||||||||||||||| |   ||| |||| |||||||||||||||||||||||||    
T  2960664 ctccaattttctttgtagcaagtccagccaatactagaacttttagcttttcctgcggatt 2960724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 10397928 - 10397868
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatt 237  Q
    ||||||||||||||||||||| ||   |||||||  ||| |||||||||||||||||||||    
T  10397928 ctccaactttctttgtagcaaacccaaccattacgagaatttttagcttttcctgcggatt 10397868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 4728526 - 4728657
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  4728526 ctccaactttctttgtagcaagccaaaccattactagaatttttagcttttcctgcggatttacctgcggatttttgagtaaattccgcaggaaacacat 4728625  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  4728626 ttcctgcagattttgccaaggatttaggttcc 4728657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 177 - 338
Target Start/End: Original strand, 25237544 - 25237705
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||| ||| |    ||||||| ||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  25237544 ctccaactttctttgtagtaagtccagtcattactagaacttttagcgttttctgcggatttacctgcggaattttgtgtaaattccgcaggaaacacat 25237643  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    ||| ||||||||||||||| |||||||||||| ||||||||||||| | || ||||||||||    
T  25237644 ttcctgcagattttgccaaggatttaggttcccaggtgaggtaataccttatgattttagga 25237705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 204 - 344
Target Start/End: Complemental strand, 2522051 - 2521912
Alignment:
Q  204 ccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttag 303  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||  ||| |||||||    
T  2522051 ccattacttgaacttttagcttttcctg-ggatttacctgcggatttttgtgtaaagtccgcaggaaacacatttcctgtagattttatcaaggatttag 2521953  T
Q  304 gttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||||| ||||||||||||||| ||||||||||||| |||||    
T  2521952 gttcccaggtgaggtaatatcttaggattttaggatccgca 2521912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 41972573 - 41972418
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  41972573 ctccaactttctttgtagcaagccgaaccattactagaacttttagcttttcctgcggattt------------ttgtgtaaattccgcaggaaacacat 41972486  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||||||||||||||| |||| ||||||| ||||||||||||||| || |||||||||| |||||    
T  41972485 ttcctgcagattttgccaaggattaaggttcccaggtgaggtaatatcttaagattttaggatccgca 41972418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 46645571 - 46645702
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||| ||||||||||||||   |||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||    
T  46645571 ctccaacttcctttgtagcaagcccaaccattactagaatttttagctttttctgcggatttacctgcggatttttgtgtaaattctgcaggaaacacat 46645670  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| |||||||||||||||   ||||||||||    
T  46645671 ttcatgcagattttgccaagagtttaggttcc 46645702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 49745076 - 49745174
Alignment:
Q  246 gatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||    
T  49745076 gatttttgtgtaaattccgtaggaaacacattttctgcagattttgccaaggatttaggttcctaggtgaggtaataccttaggattttaggatccgca 49745174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 183 - 308
Target Start/End: Original strand, 10058511 - 10058636
Alignment:
Q  183 ctttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtg 282  Q
    ||||||||||||||||||   |||||||  ||| ||||||||||||| ||||||||||||  ||| |||||||||||||||||||||||||||||||  |    
T  10058511 ctttctttgtagcaagcccaaccattacgagaatttttagcttttcccgcggatttacctggggaattttgtgtaaattccgcaggaaacacatttccag 10058610  T
Q  283 cagattttgccaaagatttaggttcc 308  Q
    |||||||| |||| ||||||||||||    
T  10058611 cagattttaccaaggatttaggttcc 10058636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 14044325 - 14044441
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||   |||||||   || |||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  14044325 ctccaattttctttgtagcaagccaagccattacgaaaatttttagcttttcctgcggatttacctgcgaatttttatgtaaattccgcaggaaacacat 14044424  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  14044425 ttcctgcagattttgcc 14044441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 2576139 - 2576271
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||  ||| ||||||||||| ||||| |||||| | || |||||||| |||||||||||||||||||||    
T  2576139 ctccaactttctttgtagcaagcccaaccattacaagaatttttagctttttctgcgaatttacttgcgaatttttgtataaattccgcaggaaacacat 2576238  T
Q  277 ttcgtgcaga-ttttgccaaagatttaggttcc 308  Q
    ||| |||||| ||||||||| ||| ||||||||    
T  2576239 ttcctgcagatttttgccaaggatgtaggttcc 2576271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 344
Target Start/End: Original strand, 36947532 - 36947653
Alignment:
Q  223 cttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaata 322  Q
    ||||| |||| ||||||||| ||||||||||| ||||||| |||||||||| ||||| ||| |||||||||||  ||||||||||| ||||| |||||||    
T  36947532 ctttttctgctgatttacctgcggatttttgtataaattctgcaggaaacatatttcctgcggattttgccaagaatttaggttcccaggtgtggtaata 36947631  T
Q  323 tcataggattttaggacccgca 344  Q
     | ||||||||||||| |||||    
T  36947632 ccttaggattttaggatccgca 36947653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 9003536 - 9003651
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||    ||||||  ||||||||| ||||| || ||||||||||| ||||||||  |||||||||||||||||||||||    
T  9003536 ctccaattttctttgtagcaagcccagtcattacaagaacttttaactttttcttcggatttacctgcggatttta-tgtaaattccgcaggaaacacat 9003634  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  9003635 ttcctgcagattttgcc 9003651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 9694067 - 9694183
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| ||||||||||| ||||    |||||||| ||||||||| ||||| |||||||||||  | |||| |||| |||||||||||||||||||||||    
T  9694067 ctccaattttctttgtagtaagctcagccattactagaacttttaactttttctgcggatttatttgcggaattttatgtaaattccgcaggaaacacat 9694166  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  9694167 ttcctgcagattttgcc 9694183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 31364170 - 31364234
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  31364170 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 31364234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 52373775 - 52373873
Alignment:
Q  246 gatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    |||||||||||||||||||||| ||||  ||||| ||||||||||| ||  |||||||||||| ||||||||||||| | ||||||||||||| |||||    
T  52373775 gatttttgtgtaaattccgcagaaaacgtatttcttgcagattttgtcagggatttaggttcccaggtgaggtaataccttaggattttaggatccgca 52373873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 8901840 - 8901931
Alignment:
Q  246 gatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| || | | ||||||||||| | |||||||||||||    
T  8901840 gatttttgtgtaaactccgcaggaaacacatttcctgcagattttgccaaggatttagatttcca-gtgaggtaataccttaggattttagga 8901931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 4552165 - 4552284
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||| | |||||||| ||| |||||||||||||||            ||||||| ||||||||||||||||||||   ||    
T  4552165 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctg------------cggatttgtgtgtaaattccgcaggaaatgtat 4552252  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  4552253 ttcctgcagattttgccaaggatttaggttcc 4552284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 11827162 - 11827047
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| ||||||||||| ||| ||  |||||||| ||||||||||||||| |||||||||||| | | ||||||| |||||||| |||| |||| ||||    
T  11827162 ctccaattttctttgtagtaagtctagccattactagaacttttagctttttctgcggatttacttgcagatttttatgtaaatttcgca-gaaatacat 11827064  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| || ||||||||||    
T  11827063 ttcctgtagattttgcc 11827047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 50099875 - 50099975
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgc 343  Q
    ||||||||||||||||||||| ||||||  |||||  |||| ||||||| || |||||||||||| |||||| |||||| | ||||||||||||| ||||    
T  50099875 cggatttttgtgtaaattccgtaggaaattcattttctgcaaattttgctaaggatttaggttcccaggtgaagtaataccttaggattttaggatccgc 50099974  T
Q  344 a 344  Q
    |    
T  50099975 a 50099975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 313
Target Start/End: Complemental strand, 31929134 - 31929043
Alignment:
Q  222 gcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggt 313  Q
    ||||||||||||||||||  | ||||||||  ||||||||| ||| |||||||||||| |||| |||||||||| |||||||||||| ||||    
T  31929134 gcttttcctgcggatttatttgcggattttattgtaaattctgcaagaaacacatttcctgcaaattttgccaaggatttaggttcccaggt 31929043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 10715690 - 10715755
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatt-tcgtgcagattttgccaaagatttaggttcc 308  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||    
T  10715690 cggatttttgtgtaaattccgcaggaaacacattgccctgcagattttgccaaggatttaggttcc 10715755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 10929460 - 10929525
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatt-tcgtgcagattttgccaaagatttaggttcc 308  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||||| ||||||||||||    
T  10929460 cggatttttgtgtaaattccgcaggaaacacattgccctgcagattttgccaaggatttaggttcc 10929525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 40969259 - 40969323
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||||||||||||||||||| |||||||||||||||  ||||||||||| ||| ||||||||||||    
T  40969259 cggatttttgtgtaaattctgcaggaaacacattttctgcagattttgtcaatgatttaggttcc 40969323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 50383868 - 50383927
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggat 236  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||    
T  50383868 ctccaactttctttgtagcaagcccagccattactagaacttttagcttttcctgcggat 50383927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 2017573 - 2017454
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||  | |||||||| ||| ||||||||||||||||||            |||||||||||||||||||||||||   ||    
T  2017573 ctccaactttctttgtagcaagctctaccattactagaatttttagcttttcctgcgg------------atttttgtgtaaattccgcaggaaatgtat 2017486  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||  ||||||||||||||  |||||||||||    
T  2017485 ttcccgcagattttgccaagtatttaggttcc 2017454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 32005894 - 32005955
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||||||||||||||||||||| | |||||| | ||| ||||||||||||||||||||||    
T  32005894 ctccaactttctttgtagcaagccctaccattattagaatttttagcttttcctgcggattt 32005955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 1585692 - 1585750
Alignment:
Q  180 caactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    ||||||||||||||||||||| | |||||||| ||| |||||||||||||||| |||||    
T  1585692 caactttctttgtagcaagccctaccattactagaatttttagcttttcctgcagattt 1585750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 15034606 - 15034545
Alignment:
Q  180 caactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacc 241  Q
    |||||||||||||| ||||||   |||||||| |||||||| ||||||||||| ||||||||    
T  15034606 caactttctttgtaacaagcccaaccattactagaacttttcgcttttcctgcagatttacc 15034545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 313
Target Start/End: Original strand, 41955229 - 41955329
Alignment:
Q  213 gaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctagg 312  Q
    |||||||| ||||||  |||||||||| ||  | ||||| |||||||||| ||||||||||  |||| | | ||||| ||||| |||||||||||| |||    
T  41955229 gaactttttgctttttttgcggatttatctcagaattttggtgtaaattcagcaggaaacatgtttcctacggatttcgccaaggatttaggttcccagg 41955328  T
Q  313 t 313  Q
    |    
T  41955329 t 41955329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 50383929 - 50383974
Alignment:
Q  250 tttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaa 295  Q
    |||| |||||||  |||||||||||||||| |||||||||||||||    
T  50383929 tttgcgtaaattttgcaggaaacacatttcctgcagattttgccaa 50383974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 14727297 - 14727428
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||| |   |||||||| ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  14727297 ctccaactttctttgtagcaagtccaaccattactagaatttttagcttttcctgcggatttacctgcggagttttgtgtaaattccgcaggaaacacat 14727396  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  14727397 ttcctgcagattttgccaaggatttaggttcc 14727428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 177 - 322
Target Start/End: Complemental strand, 48940564 - 48940419
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||| ||||||||||||||||   |||||||| |||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  48940564 ctccaacattctttgtagcaagccaagccattactagaacttttagcttttcctgcggatttatttgcggatttttgtgtaaattccgcaggaaacacat 48940465  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaata 322  Q
    ||| ||||||||||| ||| ||||||| ||   |||||||||||||    
T  48940464 ttcatgcagattttgtcaaggatttagcttttcaggtgaggtaata 48940419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 31844768 - 31844637
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||| |||||| ||   |||||||| ||| |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||    
T  31844768 ctccaactttctttctagcaaacccaaccattactagaaattttagcttttcctacggatttacctgcagatttttgtgtaaattccgcaggaaacacat 31844669  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  31844668 ttcctgcagattttgccaaggatttaggttcc 31844637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 6331653 - 6331784
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||| |||||||| |    |||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  6331653 ctccaactttctatgtagcaaactcaaccattactagaaattttagcttttcctgcgggtttacctccggatttttgtgtaaattccgcaggaaacacat 6331752  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| | ||||||||||||| ||||||||||||    
T  6331753 ttcctacagattttgccaaggatttaggttcc 6331784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 8239258 - 8239391
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaa--acac 274  Q
    |||||||||||||||||| || || | |||||||| ||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||  | |     
T  8239258 ctccaactttctttgtagtaatccctaccattactagaatttttagcttttcctgcagatttacctgcggatttttgtgtaaattccgcaggaaatatat 8239357  T
Q  275 atttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||||| ||||||||||||||| ||||||||||||    
T  8239358 atttcctgcagattttgccaaggatttaggttcc 8239391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 338
Target Start/End: Original strand, 9527024 - 9527173
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||            | ||||||||| | ||||||||||||    
T  9527024 ctccaactttctttgtagcaagcccagccattactagaacttttagcttttcctgcggattt------------tggtgtaaatttcacaggaaacacat 9527111  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
     || ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  9527112 ctcctgcagattttgccaaggatttaggttcccaggtgaggtaatatcttaggattttagga 9527173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 206 - 344
Target Start/End: Original strand, 24745410 - 24745546
Alignment:
Q  206 attacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggt 305  Q
    |||||| ||| ||||||||||  || |||||||||||  || ||||||||||||||| |||||||||||||||  ||||||||||||||| |||||||||    
T  24745410 attactagaatttttagcttt--ctacggatttacctgtggttttttgtgtaaattctgcaggaaacacattttctgcagattttgccaaggatttaggt 24745507  T
Q  306 tcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    |   ||||||||||||| | ||||||||||||| |||||    
T  24745508 tttaaggtgaggtaataccctaggattttaggatccgca 24745546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 27584149 - 27584030
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  27584149 ctccaactttctttgtagcaagccaaaccattactagaatttttagcttttcctgcggattt------------ttgtgtaaattccgcaggaaacacat 27584062  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  27584061 ttcctgcagattttgccaaggatttaggttcc 27584030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 245 - 344
Target Start/End: Original strand, 24646088 - 24646187
Alignment:
Q  245 ggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||||||||||||| |||||| |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| | | ||||||| ||| |||||    
T  24646088 ggatttttgtgtacattccgtaggaaacacatttcctgcagattttgccaaggatttaggttcccaggtgaggtaatacctttggatttttggatccgca 24646187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 25011672 - 25011553
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||| ||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  25011672 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggattt------------ttgtgtaaattccgcaggaaacacat 25011585  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||  ||||||||||||||| ||||||||||||    
T  25011584 tttctgcagattttgccaaggatttaggttcc 25011553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 27460675 - 27460794
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||| |||||||||||| ||||||            ||||||||||||||||| |||||||||||    
T  27460675 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcttgcgga------------tttttgtgtaaattccgaaggaaacacat 27460762  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  27460763 ttcctgcagattttgccaaggatttaggttcc 27460794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 34459143 - 34459244
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgc 343  Q
    |||||| ||||| || ||||| |||||||||||||| ||||||||||||||| |||||| ||||  ||||||||||||| | ||||||||||||| ||||    
T  34459143 cggattgttgtggaatttccgtaggaaacacatttcctgcagattttgccaaggatttaagttctcaggtgaggtaataccttaggattttaggatccgc 34459242  T
Q  344 aa 345  Q
    ||    
T  34459243 aa 34459244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 4642151 - 4642051
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgc 343  Q
    ||||||||| |||||||| | ||||||| ||||||| ||||||||||| ||| |||||||||| | ||||||||||||| | ||||||||||||| ||||    
T  4642151 cggatttttatgtaaatttcacaggaaatacatttcttgcagattttgtcaaggatttaggtttcgaggtgaggtaataccttaggattttaggatccgc 4642052  T
Q  344 a 344  Q
    |    
T  4642051 a 4642051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 25007443 - 25007561
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||| | |||||||| ||| |||||||||||||||            ||||||||||||||||||||||| ||||   ||    
T  25007443 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctg------------cggatttttgtgtaaattccgcaagaaatgtat 25007530  T
Q  277 ttcgtgcagattttgccaaagatttaggttc 307  Q
    ||| ||||||||||||||| |||||||||||    
T  25007531 ttcctgcagattttgccaaggatttaggttc 25007561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 44238995 - 44238872
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||| |||||   |||||||| ||| |||||||||||| |||||||||           ||| ||||||||| |||||||||||||    
T  44238995 ctccaactttctttgtagaaagcccagccattactagaaattttagcttttcttgcggattt-----------tttttgtaaattctgcaggaaacacat 44238907  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctag 311  Q
    ||| || |||||||||||| |||||||||||||||    
T  44238906 ttcttgtagattttgccaaggatttaggttcctag 44238872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 37154126 - 37154007
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||| ||||  | |||||||| ||| ||||||||||||||||||||||            |||||||||||||||||||||   ||    
T  37154126 ctccaactttctttgtaggaagctctaccattactagaatttttagcttttcctgcggattt------------ttgtgtaaattccgcaggaaatgtat 37154039  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  37154038 ttcctgcagattttgccaaggatttaggttcc 37154007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 44305391 - 44305510
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||| ||||| | | |||||| ||| |||||||||||||||||||            ||||||||||||||||||||||||   ||    
T  44305391 ctccaactttctttgtaggaagccctacaattactagaatttttagcttttcctgcgga------------tttttgtgtaaattccgcaggaaatgtat 44305478  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  44305479 ttcctgcagattttgccaaggatttaggttcc 44305510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 338
Target Start/End: Complemental strand, 6802181 - 6802083
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgca----gattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    ||||||||| |||||||||| ||||||||||||||| |||     ||||||||||| |||||||||||| ||||||||||||| | || ||||||||||    
T  6802181 cggatttttctgtaaattccacaggaaacacatttcctgcctgcggattttgccaaggatttaggttcccaggtgaggtaataccttacgattttagga 6802083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 49898442 - 49898511
Alignment:
Q  276 tttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgcaa 345  Q
    |||| ||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| ||||||    
T  49898442 tttcctgcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatccgcaa 49898511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 1428516 - 1428455
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||||||||||||||||||||| | |||||||| ||| |||||| ||||||||| |||||    
T  1428516 ctccaactttctttgtagcaagccctaccattactagaatttttagtttttcctgcagattt 1428455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 4773986 - 4774045
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggat 236  Q
    |||||| ||| |||||||||||||   |||||||| ||||||||||||||||||||||||    
T  4773986 ctccaattttttttgtagcaagcccagccattactagaacttttagcttttcctgcggat 4774045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 4642206 - 4642145
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||| |||||||||||||||||     |||||||| ||||||||||||||||||||||||||    
T  4642206 ctccgactttctttgtagcaagttcagccattactagaacttttagcttttcctgcggattt 4642145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 4774051 - 4774085
Alignment:
Q  254 tgtaaattccgcaggaaacacatttcgtgcagatt 288  Q
    |||||||||||||||||||||||||| ||||||||    
T  4774051 tgtaaattccgcaggaaacacatttcctgcagatt 4774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 3216156 - 3216119
Alignment:
Q  276 tttcgtgcagattttgccaaagatttaggttcctaggt 313  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  3216156 tttcctgcggattttgccaaagatttaggttcctaggt 3216119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 33469050 - 33469013
Alignment:
Q  204 ccattacttgaacttttagcttttcctgcggatttacc 241  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  33469050 ccattactagaaattttagcttttcctgcggatttacc 33469013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 6802231 - 6802175
Alignment:
Q  182 actttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    ||||||||||||||||||    |||||||| |||||| | |||||||||||||||||    
T  6802231 actttctttgtagcaagctcagccattactagaacttctcgcttttcctgcggattt 6802175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 7500929 - 7501060
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||||||   |||||||| ||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  7500929 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcggatttacatgcggatgtttgtgtaaattccgcaggaaacacat 7501028  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| | ||||||||||||| ||||||||||||    
T  7501029 ttcctacagattttgccaaggatttaggttcc 7501060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 177 - 344
Target Start/End: Complemental strand, 41218519 - 41218352
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||| |||||| ||||||||||||   |||||||| |||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||    
T  41218519 ctccgactttccttgtagcaagcccagccattactagaacttttagcttttcctgcggatttacttgcgcatttttgtctaaattccgcaggaaacacat 41218420  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||| |||||||||||  ||||||||||  | ||||||||||| | ||||||||||||| |||||    
T  41218419 ttcctgccgattttgccaagaatttaggttctcatgtgaggtaataccttaggattttaggatccgca 41218352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 37516616 - 37516746
Alignment:
Q  178 tccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatt 277  Q
    ||||||||||||||||||||| |   |||||||| ||| |||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||    
T  37516616 tccaactttctttgtagcaagtccaaccattactagaatttttagcttttcctgcggatttacctgcggaattttgtgtaaattctgcaggaaacacatt 37516715  T
Q  278 tcgtgcagattttgccaaagatttaggttcc 308  Q
    || ||||||||||||||| ||| ||||||||    
T  37516716 tcctgcagattttgccaaggatctaggttcc 37516746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 26278336 - 26278452
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||| |||||||||  |||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  26278336 ctccaattttctttggagcaagcctagccattactagaatttttagcttttcatgcggatttacctacggatttttatgtaaattccggaggaaacacat 26278435  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  26278436 ttcctgcagattttgcc 26278452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 308
Target Start/End: Complemental strand, 26371142 - 26371038
Alignment:
Q  204 ccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttag 303  Q
    |||||||| ||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  26371142 ccattactagaaattttagcattttctgcggatttacctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttag 26371043  T
Q  304 gttcc 308  Q
    |||||    
T  26371042 gttcc 26371038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 338
Target Start/End: Complemental strand, 33179260 - 33179111
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||| ||||||||||| |   |||||||| ||||||||||||||||||||| ||||            ||||||||||||||||||||||||||    
T  33179260 ctccaactttttttgtagcaagtccagccattactagaacttttagcttttcctgcgaattt------------ttgtgtaaattccgcaggaaacacat 33179173  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    ||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||    
T  33179172 ttcctgcagattttgccaaggatttaggttcccaggtgaggtaataccataggattttagga 33179111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 53068282 - 53068376
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||||||||||||||||| ||||| | |||||||||||||    
T  53068282 cggatttttgtgtaaattccacaggaaacacatttcctgcagattttgccaagaatttaggttcctaggtgagataataccttaggattttagga 53068376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 178 - 293
Target Start/End: Original strand, 35077198 - 35077313
Alignment:
Q  178 tccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatt 277  Q
    ||||| |||||||||||||||| |  ||||| |  ||||||||||||||| ||||||||||||||  | |||||| ||||||||||||||||||||||||    
T  35077198 tccaattttctttgtagcaagcgtagccattgccagaacttttagctttttctgcggatttacctgggaatttttatgtaaattccgcaggaaacacatt 35077297  T
Q  278 tcgtgcagattttgcc 293  Q
    || |||||||||||||    
T  35077298 tcctgcagattttgcc 35077313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 307
Target Start/End: Original strand, 53651883 - 53652001
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||||            ||||||||||||||||||||||||  |||    
T  53651883 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcgga------------tttttgtgtaaattccgcaggaaatgcat 53651970  T
Q  277 ttcgtgcagattttgccaaagatttaggttc 307  Q
    ||| ||||||||||||||| |||||||||||    
T  53651971 ttcctgcagattttgccaaggatttaggttc 53652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 44047569 - 44047688
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||| | |||||||| ||| |||||||||||||||            ||||||||||||||||||||||||||||   ||    
T  44047569 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctg------------cggatttttgtgtaaattccgcaggaaatgtat 44047656  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  44047657 ttcctgcagattttgccaaggatttaggttcc 44047688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 182 - 344
Target Start/End: Complemental strand, 41358758 - 41358595
Alignment:
Q  182 actttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaa-ttccgcaggaaacacatttcg 280  Q
    |||||||||||||||| |    |||||| | |||||| | ||||||||| ||||||||| | ||||| |||||||||| |||| |   |||||||||||     
T  41358758 actttctttgtagcaaactcaaccattattagaacttctcgcttttcctacggatttacttgcggatatttgtgtaaaattcctccaaaaacacatttcc 41358659  T
Q  281 tgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| ||||||||||| |||||||||||  ||||||||||||| | ||||||||| ||| |||||    
T  41358658 tgcggattttgccaatgatttaggttctcaggtgaggtaataccttaggatttttggatccgca 41358595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 12909805 - 12909866
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    |||||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||    
T  12909805 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctgcggattt 12909866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 25391960 - 25391841
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||| |||||||||| | |||||||| ||| ||||||||||||||||||            |||||||||||||||||||| ||||   ||    
T  25391960 ctccaactttcttcgtagcaagccctaccattactagaatttttagcttttcctgcgg------------atttttgtgtaaattccgcaagaaatgtat 25391873  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| |||| |||||||||| ||||||||||||    
T  25391872 ttcttgcaaattttgccaaggatttaggttcc 25391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 28311262 - 28311381
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||| |||||| | |||||||| ||| |||||| ||||||||||||            ||||||||||||||||||||||||   ||    
T  28311262 ctccaactttctttgtaacaagccctaccattactagaatttttagtttttcctgcgga------------tttttgtgtaaattccgcaggaaatgtat 28311349  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| || |||||||||||| ||||||||||||    
T  28311350 ttcctgtagattttgccaaggatttaggttcc 28311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 53987904 - 53987953
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgcc 293  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  53987904 cggatttttatgtaaattccgcaggaaacacatttcctgcagattttgcc 53987953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 38239494 - 38239562
Alignment:
Q  245 ggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcctaggt 313  Q
    ||||||| |||||||||| |||||||||||||||  ||| ||||||||||| |||||||||| ||||||    
T  38239494 ggattttagtgtaaattctgcaggaaacacattttctgcggattttgccaaggatttaggtttctaggt 38239562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 14461050 - 14461169
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| ||||||||||||||||| | |||||||| ||| ||||| |||||||||            ||||||||| ||||||||||||||||||   ||    
T  14461050 ctccaattttctttgtagcaagccctaccattactagaatttttaacttttcctg------------cggatttttatgtaaattccgcaggaaatgtat 14461137  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
     || ||||||||||||||| ||||||||||||    
T  14461138 gtcctgcagattttgccaaggatttaggttcc 14461169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 43700290 - 43700229
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    ||||||||||||||||||||||||   |||||||| ||| |||||||||||||||| |||||    
T  43700290 ctccaactttctttgtagcaagcccaaccattactagaatttttagcttttcctgcagattt 43700229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 9600390 - 9600438
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgc 292  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||||||||    
T  9600390 cggatttttatgtaaattctgcaggaaacacatttcctgcagattttgc 9600438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 44625683 - 44625744
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggattt 238  Q
    ||||||||||||||||||||||||   | |||||| ||| |||||||||||||||| |||||    
T  44625683 ctccaactttctttgtagcaagcccaactattactagaatttttagcttttcctgcagattt 44625744  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 47511725 - 47511667
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagattta 302  Q
    ||||||||||| ||||||  | |||||||||||||| ||| |||||||| |||||||||    
T  47511725 cggatttttgtataaattttgaaggaaacacatttcctgcggattttgctaaagattta 47511667  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Original strand, 12909899 - 12909932
Alignment:
Q  275 atttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||||| ||||||||||||||||||||||||||||    
T  12909899 atttcctgcagattttgccaaagatttaggttcc 12909932  T

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Target: scaffold0021 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 338
Target Start/End: Complemental strand, 109447 - 109286
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    ||||||||||||||||||||| ||     |||||| ||||||||| ||||||||| |||||||||| || ||||||||||||||||||||| ||||||||    
T  109447 ctccaactttctttgtagcaaccccagttattactagaacttttaacttttcctgtggatttacctgcgaatttttgtgtaaattccgcagaaaacacat 109348  T
Q  277 ttcgtgcagattttgccaaagatttaggttcctaggtgaggtaatatcataggattttagga 338  Q
     |  |||||||||||| ||  ||||||||||| ||||||| ||||| |||||||||||||||    
T  109347 gttctgcagattttgctaagaatttaggttcccaggtgagataataccataggattttagga 109286  T

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Target: scaffold0021; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 206 - 344
Target Start/End: Complemental strand, 112333 - 112198
Alignment:
Q  206 attacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggt 305  Q
    |||||| ||||||||| |||||||| ||||||||||| || ||||||||||||||||| |||   ||||||||  |||||||| ||| ||  ||||||||    
T  112333 attactagaacttttaacttttcctacggatttacctgcgaatttttgtgtaaattccacag---acacattttctgcagattctgctaagaatttaggt 112237  T
Q  306 tcctaggtgaggtaatatcataggattttaggacccgca 344  Q
    ||| || |||||||||| ||||||||||||||| |||||    
T  112236 tcccagatgaggtaataccataggattttaggatccgca 112198  T

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Target: scaffold0638 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 4078 - 4194
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||| |||||||||||||||||   |||||||| ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||| |||||||||||    
T  4078 ctccaattttctttgtagcaagcccagccattactagaacttttagcttttcctgcgaatttacctgcggatgtttatgtaaattccgtaggaaacacat 4177  T
Q  277 ttcgtgcagattttgcc 293  Q
    ||| |||||||||||||    
T  4178 ttcctgcagattttgcc 4194  T

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Target: scaffold0075 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 6890 - 7009
Alignment:
Q  177 ctccaactttctttgtagcaagcctttccattacttgaacttttagcttttcctgcggatttacctacggatttttgtgtaaattccgcaggaaacacat 276  Q
    |||||||||||||||||||||||| | |||||||| ||| |||||||||||||||            |||||| |||||||||||||| ||||||  |||    
T  6890 ctccaactttctttgtagcaagccctaccattactagaatttttagcttttcctg------------cggattattgtgtaaattccgaaggaaatgcat 6977  T
Q  277 ttcgtgcagattttgccaaagatttaggttcc 308  Q
    ||| ||||||||||||||| ||||||||||||    
T  6978 ttcctgcagattttgccaaggatttaggttcc 7009  T

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Target: scaffold0075; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 11558 - 11622
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||| ||||||||||||||||| |||  |||||| ||||||||||||||| ||||||||||||    
T  11558 cggattattgtgtaaattccgcagaaaatgcatttcctgcagattttgccaaggatttaggttcc 11622  T

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Target: scaffold0618 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 1730 - 1794
Alignment:
Q  244 cggatttttgtgtaaattccgcaggaaacacatttcgtgcagattttgccaaagatttaggttcc 308  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||||| |||||    
T  1730 cggatttttgtgtaaatttcgcaggaaacacatttcctgcagattttgccaagaatttacgttcc 1794  T

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