View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_49 (Length: 304)

Name: NF7636_high_49
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_49
NF7636_high_49
[»] chr3 (13 HSPs)
chr3 (16-287)||(33270378-33270649)
chr3 (94-180)||(4844495-4844581)
chr3 (94-180)||(4870191-4870277)
chr3 (92-175)||(14186659-14186741)
chr3 (92-175)||(11612310-11612393)
chr3 (92-175)||(12761523-12761606)
chr3 (92-143)||(44069801-44069852)
chr3 (94-175)||(5499391-5499472)
chr3 (116-185)||(17554772-17554841)
chr3 (94-143)||(27093345-27093394)
chr3 (94-175)||(47810728-47810809)
chr3 (94-175)||(53412956-53413037)
chr3 (106-166)||(37788461-37788521)
[»] chr5 (6 HSPs)
chr5 (92-179)||(16773814-16773901)
chr5 (91-180)||(14495786-14495875)
chr5 (94-180)||(29692370-29692456)
chr5 (94-175)||(16457821-16457902)
chr5 (116-180)||(892480-892544)
chr5 (94-174)||(18973977-18974052)
[»] chr7 (18 HSPs)
chr7 (94-175)||(22760874-22760955)
chr7 (106-175)||(43215195-43215264)
chr7 (101-171)||(18056766-18056836)
chr7 (94-175)||(26459394-26459475)
chr7 (92-143)||(2882993-2883044)
chr7 (94-169)||(5579218-5579293)
chr7 (116-174)||(7801192-7801250)
chr7 (105-179)||(14058260-14058334)
chr7 (105-179)||(14368288-14368362)
chr7 (94-172)||(33222384-33222462)
chr7 (94-180)||(47824584-47824670)
chr7 (94-175)||(15137564-15137645)
chr7 (106-175)||(17041008-17041077)
chr7 (118-175)||(23595740-23595797)
chr7 (94-175)||(25655212-25655293)
chr7 (91-175)||(4566409-4566493)
chr7 (92-168)||(21558146-21558222)
chr7 (107-175)||(23301599-23301667)
[»] chr8 (7 HSPs)
chr8 (92-179)||(968369-968456)
chr8 (92-166)||(6536540-6536614)
chr8 (92-169)||(23361631-23361708)
chr8 (92-155)||(28787478-28787541)
chr8 (94-175)||(2203503-2203584)
chr8 (103-175)||(3624591-3624663)
chr8 (94-162)||(33017238-33017306)
[»] chr2 (11 HSPs)
chr2 (92-166)||(11251107-11251181)
chr2 (92-176)||(12086111-12086195)
chr2 (120-179)||(12994386-12994445)
chr2 (92-175)||(21213780-21213863)
chr2 (94-175)||(19244120-19244201)
chr2 (102-175)||(37480086-37480159)
chr2 (94-175)||(42327379-42327460)
chr2 (94-175)||(42602565-42602646)
chr2 (94-175)||(34041572-34041653)
chr2 (94-175)||(40416374-40416455)
chr2 (116-168)||(39715010-39715062)
[»] chr1 (9 HSPs)
chr1 (93-175)||(19940855-19940937)
chr1 (94-179)||(34228881-34228965)
chr1 (94-175)||(37400285-37400366)
chr1 (94-155)||(51281382-51281443)
chr1 (92-170)||(12587286-12587363)
chr1 (102-175)||(19528319-19528392)
chr1 (94-175)||(51814505-51814586)
chr1 (92-179)||(952518-952605)
chr1 (94-175)||(31605832-31605913)
[»] scaffold0517 (1 HSPs)
scaffold0517 (94-175)||(7710-7791)
[»] chr6 (8 HSPs)
chr6 (91-175)||(12234488-12234572)
chr6 (92-175)||(33549115-33549198)
chr6 (101-167)||(6385881-6385947)
chr6 (94-175)||(31622975-31623056)
chr6 (116-175)||(34444814-34444873)
chr6 (94-175)||(14557973-14558053)
chr6 (116-168)||(10338180-10338232)
chr6 (91-143)||(28841457-28841509)
[»] chr4 (5 HSPs)
chr4 (92-164)||(7949436-7949508)
chr4 (94-175)||(5795393-5795474)
chr4 (94-175)||(37109335-37109416)
chr4 (94-143)||(4249220-4249269)
chr4 (94-175)||(46295108-46295189)
[»] scaffold0258 (1 HSPs)
scaffold0258 (92-175)||(15305-15388)
[»] scaffold0006 (1 HSPs)
scaffold0006 (91-180)||(162990-163079)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 33270378 - 33270649
Alignment:
Q  16 atccacaagaaatcccaacctgcagcagattaaattaatcattcaatctatacatttaaaagaaaattaacagtttctaaattgccaccggagagaatga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  33270378 atccacaagaaatcccaacctgcagcagattaaattaatcattcaatctatacatttaaaagaaaattaacagttttcaaattgccaccggagagaatga 33270477  T
Q  116 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaaatccacaagaaaattaacagttaaatgatgaaatt 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33270478 aacctgagacctttaggtggaacacacttagaggtcccaagtcaataccaccagaccaacccaaaatccacaagaaaattaacagttaaatgatgaaatt 33270577  T
Q  216 aattaagtacctgaaaactccaaatgcaacttgaaaaattccagcaaataatgttacagtaaagacaaaatt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33270578 aattaagtacctgaaaactccaaatgcaacttgaaaaattccagcaaataatgttacagtaaagacaaaatt 33270649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 4844495 - 4844581
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 180  Q
    |||||| |||||||||||||  | ||||||||||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  4844495 aaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 4844581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 4870191 - 4870277
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 180  Q
    |||||| |||||||||||||  | ||||||||||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  4870191 aaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 4870277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 14186741 - 14186659
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||||| |||||||||||||  ||||||||||||| ||| ||||||||| |  |||||||||| ||||||||| || |||||    
T  14186741 ctaaattgacaccggagagaatcgaacctgagaccttgaggaggagcacac-tccaggtcccaagacaataccactaggccaac 14186659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 11612393 - 11612310
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||||| |||||| ||| ||  ||||||||||||| ||| ||||||||||   || |||||||| ||||||||||| |||||    
T  11612393 ctaaattggcaccggggagcatcgaacctgagaccttaaggaggagcacactcccagctcccaagtgaataccaccaggccaac 11612310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 12761606 - 12761523
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||||| |||||| || |||  ||||||||| ||  ||| ||| ||||||   |||||||||||||||||||||||||||||    
T  12761606 ctaaattggcaccggggaaaatcgaacctgagagctcaaggaggaacacactcccaggtcccaagtcaataccaccagaccaac 12761523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 44069852 - 44069801
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 143  Q
    |||||||| ||||||| ||||| |||||||||||||| ||| ||||||||||    
T  44069852 ctaaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacact 44069801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 5499391 - 5499472
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||||| ||||||  ||||| ||||||| ||| ||||||||||   || || ||||||||||||||||| |||||    
T  5499391 aaattggcaccggggagaatagaaccttagaccttaaggaggagcacactctcagatctcaagtcaataccaccaggccaac 5499472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 185
Target Start/End: Complemental strand, 17554841 - 17554772
Alignment:
Q  116 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaaatcca 185  Q
    |||||||| |||| |||  |||||||||   |||||||||| ||||||||||| |||||| |||||||||    
T  17554841 aacctgagcccttgaggaagagcacactcccaggtcccaagccaataccaccaaaccaacccaaaatcca 17554772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 27093345 - 27093394
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 143  Q
    |||||| |||| |||||||| |||||||||||||| ||| ||||||||||    
T  27093345 aaattggcaccagagagaatcaaacctgagaccttgaggaggagcacact 27093394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 47810728 - 47810809
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| ||||||||||||| ||||| ||||||||  || ||||||||||   | | || ||| ||||||||||||||||||    
T  47810728 aaattggcaccggagagaatcaaacccgagaccttgcggaggagcacactcccaagaccaaagccaataccaccagaccaac 47810809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 53413037 - 53412956
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   ||||  |||| ||||||||| ||||||||    
T  53413037 aaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcccaggttacaagccaataccactagaccaac 53412956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 37788461 - 37788521
Alignment:
Q  106 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccac 166  Q
    ||||||||  ||||||||||||| ||| ||||||||||   |||| |||||||||||||||    
T  37788461 gagagaatcgaacctgagaccttgaggaggagcacactcctaggttccaagtcaataccac 37788521  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 16773901 - 16773814
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 179  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||||||||||||||||||||||||||    
T  16773901 ctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaa 16773814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 14495786 - 14495875
Alignment:
Q  91 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 180  Q
    ||||||||| || |||||||||| ||| |||||||||  ||| ||||||||||   || |||||||||||||||||||||||||| ||||    
T  14495786 tctaaattggcatcggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccagaccaacccaaa 14495875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 29692370 - 29692456
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 180  Q
    |||||| || |||||||||| ||||||||||| || ||| ||||||||||   || ||||||  |||||||||||||||||| ||||    
T  29692370 aaattggcatcggagagaattaaacctgagactttgaggaggagcacactcccagatcccaatccaataccaccagaccaacccaaa 29692456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 16457902 - 16457821
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||||| ||||||  ||| ||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  16457902 aaattggcaccggggagaattgaacatgagaccttgaggaggagcacactccaaggtcccaagccaataccaccaggccaac 16457821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 892480 - 892544
Alignment:
Q  116 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 180  Q
    ||||||||||||| ||| |||| |||||  ||||||||||| ||||||||| || ||||| ||||    
T  892480 aacctgagaccttgaggaggagtacactctgaggtcccaagccaataccactaggccaacccaaa 892544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 18974052 - 18973977
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaa 174  Q
    |||||| |||| | ||||||  ||||||| ||||| ||| ||||||||     ||||||||||||||||||||||||||||    
T  18974052 aaattggcaccagggagaatcgaacctgacaccttgaggaggagcaca-----aggtcccaagtcaataccaccagaccaa 18973977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 22760955 - 22760874
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| || ||| ||||||  ||||||||||||| ||| ||||||||||   |||||||||||||||||||||||||||||    
T  22760955 aaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaac 22760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 43215264 - 43215195
Alignment:
Q  106 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||||||  ||||||||||||| ||| ||||||||||  ||||||||||| ||||||||| ||||||||    
T  43215264 gagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaac 43215195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 18056766 - 18056836
Alignment:
Q  101 caccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagac 171  Q
    |||||| ||||||  ||||||||||||| ||| ||||||||||  || | |||||||||||||||||||||    
T  18056766 caccggggagaatcgaacctgagaccttcaggaggagcacactccgaagacccaagtcaataccaccagac 18056836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 26459394 - 26459475
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||||||| || |||||    
T  26459394 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 26459475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 2883044 - 2882993
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 143  Q
    ||||||||||||| ||||||||  ||||||||||||| ||| ||||||||||    
T  2883044 ctaaattgccaccagagagaattgaacctgagaccttgaggaggagcacact 2882993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 5579218 - 5579293
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccag 169  Q
    |||||| |||||| |||| | |||||||||||||| ||| ||||||||||   |||||||||| ||| ||||||||    
T  5579218 aaattggcaccggggagagtcaaacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccag 5579293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 7801250 - 7801192
Alignment:
Q  116 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaa 174  Q
    ||||||||||||| | | ||||||||||   ||||||||||||||||||||||| ||||    
T  7801250 aacctgagaccttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaa 7801192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 14058334 - 14058260
Alignment:
Q  105 ggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 179  Q
    |||||||||  ||||||||||||| |||  |||||||||   |||| ||||| |||||||||||| |||||||||    
T  14058334 ggagagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaactcaa 14058260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 14368362 - 14368288
Alignment:
Q  105 ggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 179  Q
    |||||||||  ||||||||||||| |||  |||||||||   |||| ||||| |||||||||||| |||||||||    
T  14368362 ggagagaatcgaacctgagaccttgaggatgagcacactctcaggttccaagacaataccaccaggccaactcaa 14368288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 33222462 - 33222384
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagacc 172  Q
    |||||| |||| ||||||||  ||||||||||||| |||  ||| ||||||  |||||||||| ||||||||| |||||    
T  33222462 aaattgacaccagagagaatcgaacctgagaccttgaggatgagtacacttccaggtcccaagccaataccactagacc 33222384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 47824584 - 47824670
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 180  Q
    |||||| ||||||||| |||  ||| |||||| || ||| |||||||||||   |||| ||||||||||||||||  ||||||||||    
T  47824584 aaattgacaccggagacaatcgaacatgagactttgaggaggagcacacttcatggtctcaagtcaataccaccacgccaactcaaa 47824670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 15137645 - 15137564
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |  |||||||||| ||||||||| |||||    
T  15137645 aaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccaccaggccaac 15137564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 17041008 - 17041077
Alignment:
Q  106 gagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||||||  ||||||||||||| ||| |||||||||||  || ||||||| |||| |||| ||||||||    
T  17041008 gagagaatcgaacctgagaccttgaggaggagcacacttccagatcccaagccaatgccactagaccaac 17041077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 23595797 - 23595740
Alignment:
Q  118 cctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||| ||||| ||| ||||||||||  ||| || |||||||||||||||||||||||    
T  23595797 cctgataccttgaggaggagcacactccgagatctcaagtcaataccaccagaccaac 23595740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 25655212 - 25655293
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||| ||||||||  ||||||| ||||| ||| ||| |||||| | || ||||||||||||||||| | ||||||    
T  25655212 aaattggcaccagagagaatcgaacctgaaaccttgaggaggatcacactcacagatcccaagtcaataccactaaaccaac 25655293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 4566409 - 4566493
Alignment:
Q  91 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||||||| |||| |||||||| |||||||||||||| ||  |||  |||||   |||||| ||||||||||||| || |||||    
T  4566409 tctaaattggcaccagagagaatcaaacctgagaccttgagaaggaatacactccaaggtccgaagtcaataccactaggccaac 4566493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 21558222 - 21558146
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacca 168  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| |||||||| |   |||| |||||||||||| ||||    
T  21558222 ctaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacattcttaggttccaagtcaatactacca 21558146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 23301599 - 23301667
Alignment:
Q  107 agagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||||| |||| ||||||||  ||| ||||||||||   | ||||||||||||||||||||| |||||    
T  23301599 agagaatcaaacttgagacctcaaggaggagcacactcccaagtcccaagtcaataccaccaggccaac 23301667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 968456 - 968369
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 179  Q
    |||||||| || ||||||||||  ||||||||||||  ||| ||||||||||   |||||||||| |||||||||||| |||||||||    
T  968456 ctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaa 968369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 6536614 - 6536540
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccac 166  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||    
T  6536614 ctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaataccac 6536540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 23361631 - 23361708
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccag 169  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |  ||||||||||||||||||||    
T  23361631 ctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccag 23361708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 28787478 - 28787541
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaa 155  Q
    |||||||| ||| || |||||| |||||||||||||| ||| |||||||||||  |||||||||    
T  28787478 ctaaattggcactggggagaatcaaacctgagaccttgaggaggagcacacttgaaggtcccaa 28787541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 2203584 - 2203503
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||||| ||||||  | ||||||||||| ||| ||||||||||   |||||||||| ||||||||| || |||||    
T  2203584 aaattggcaccggggagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 2203503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 3624663 - 3624591
Alignment:
Q  103 ccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||||||||  ||||||||||||| | | ||||||||||   |||||||||| ||||||||| || |||||    
T  3624663 ccggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaac 3624591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 33017306 - 33017238
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaata 162  Q
    |||||| |||| ||||||||  ||||||||||||| ||| |||||||||||  |||| ||||| |||||    
T  33017306 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacacttccaggttccaagccaata 33017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 11251181 - 11251107
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccac 166  Q
    |||||||| |||| |||||||| |||||||||||||| ||| |||||||||||  | |||||||| |||||||||    
T  11251181 ctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccac 11251107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 12086111 - 12086195
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaact 176  Q
    |||||||  |||||||| ||||  |||| |||||||| ||| |||||||||||  |||||||||| |||||||||||| ||||||    
T  12086111 ctaaattagcaccggagggaatcgaacccgagaccttgaggaggagcacacttccaggtcccaagccaataccaccaggccaact 12086195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 12994386 - 12994445
Alignment:
Q  120 tgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 179  Q
    ||||||||| ||| ||||||||||   |||||||||||||||||||| ||||||||||||    
T  12994386 tgagaccttaaggaggagcacactcccaggtcccaagtcaataccactagaccaactcaa 12994445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 21213863 - 21213780
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||||| |||||| ||||||  ||||||||||||  ||| ||| ||||||   |||||||||| ||||||||||||||||||    
T  21213863 ctaaattggcaccggggagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaac 21213780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 19244201 - 19244120
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||| ||||||||  |||||||||||||  || ||||||||||   |||||||||||||||||||  ||||||||    
T  19244201 aaattggcaccagagagaatcgaacctgagaccttggggaggagcacactctcaggtcccaagtcaataccagtagaccaac 19244120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 37480159 - 37480086
Alignment:
Q  102 accggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||| ||||||  ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||| |||||    
T  37480159 accggggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaac 37480086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 42327379 - 42327460
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| ||||| |||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||||||| || |||||    
T  42327379 aaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 42327460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 42602646 - 42602565
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| ||||||||||||| |||||| ||||||| ||  ||||||||||   |||||||||| ||||||||| || |||||    
T  42602646 aaattggcaccggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccactaggccaac 42602565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 34041572 - 34041653
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||| ||| |||| |||||||||||||| ||| ||||||||||   || ||| ||||||||||||| || |||||    
T  34041572 aaattggcaccagagggaatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaac 34041653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 40416374 - 40416455
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||| ||||||||  ||||||||||||| ||| |||||| |||   |||| ||||||||||||||| || |||||    
T  40416374 aaattggcaccagagagaatcgaacctgagaccttaaggaggagcatactcccaggttccaagtcaataccactaggccaac 40416455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 39715062 - 39715010
Alignment:
Q  116 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacca 168  Q
    ||||||||||||  ||| ||||||||||   ||||||||||||||||||||||    
T  39715062 aacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccacca 39715010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 19940855 - 19940937
Alignment:
Q  93 taaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||||| ||||||||||||| |||||||||||||| ||| ||||||||||   ||| ||||||  || ||||||||||||||    
T  19940855 taaattggcaccggagagaatcaaacctgagaccttaaggaggagcacactccaaggacccaagctaacaccaccagaccaac 19940937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 34228965 - 34228881
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 179  Q
    |||||| |||||||||||||  ||||||||||||| ||  ||| ||||||  ||||||||||| ||| ||||||||||||||||||    
T  34228965 aaattggcaccggagagaatccaacctgagaccttgaga-ggaacacactccgaggtcccaagccaacaccaccagaccaactcaa 34228881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 37400366 - 37400285
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| ||||||| |||||  ||| ||||||||| ||| |||||||||||  ||||| |||| ||||||||||||||||||    
T  37400366 aaattggcaccggatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaac 37400285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 51281443 - 51281382
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaa 155  Q
    |||||| | ||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  51281443 aaattggcgccggagagaatcaaacctgagaccttgaggaggagcacactttgaggtcccaa 51281382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 12587363 - 12587286
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccaga 170  Q
    ||||||||| ||||||||||||  ||||||||||||  ||| |||||||||| | || ||||||||||||| |||||||    
T  12587363 ctaaattgc-accggagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaatatcaccaga 12587286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 19528319 - 19528392
Alignment:
Q  102 accggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||| ||||||  ||||||||||||| ||| |||||||||| | || ||||||| |||||||||||| |||||    
T  19528319 accggggagaatcgaacctgagaccttgaggaggagcacactcatagatcccaagccaataccaccaggccaac 19528392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 51814586 - 51814505
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||||||||||||  ||||||||||||| ||| ||||||||||   || || ||||||||||||| ||| |||||    
T  51814586 aaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaac 51814505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 952605 - 952518
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaa 179  Q
    |||||||| || ||| ||||||  |||||||||| || |||  |||||||||   |||||||||| ||| ||||||||||||||||||    
T  952605 ctaaattgacatcggggagaatctaacctgagactttgaggatgagcacactcccaggtcccaagccaacaccaccagaccaactcaa 952518  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 31605832 - 31605913
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||||| ||||||  ||| ||||||||| ||| |||||||||||  |||||||||| ||| |||| ||| |||||    
T  31605832 aaattggcaccggggagaatcgaacttgagaccttgaggaggagcacacttcaaggtcccaagccaacaccatcaggccaac 31605913  T

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Target: scaffold0517 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 7710 - 7791
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| ||||||| |||||  ||| ||||||||| ||| |||||||||||  ||||| |||| ||||||||||||||||||    
T  7710 aaattggcaccggatagaatcgaacttgagaccttaaggaggagcacactttcaggtctcaagccaataccaccagaccaac 7791  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 12234488 - 12234572
Alignment:
Q  91 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    ||||||||| ||| |||||||||  ||||||||||||  ||  ||||||||||   ||||||||||||||||||||||| |||||    
T  12234488 tctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggccaac 12234572  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 33549198 - 33549115
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||||||||||||||||    
T  33549198 ctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaac 33549115  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 6385947 - 6385881
Alignment:
Q  101 caccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacc 167  Q
    |||||||||||||  ||||||||||||| ||| |||||||| |   |||||||||||||||||||||    
T  6385947 caccggagagaatcgaacctgagaccttaaggaggagcacagtcccaggtcccaagtcaataccacc 6385881  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 31622975 - 31623056
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||||||| || | |||||||||||||  ||| ||||||||||   |||||||||| |||||||||| |||||||    
T  31622975 aaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccggaccaac 31623056  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 34444873 - 34444814
Alignment:
Q  116 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||||||||||  || ||||||||||   ||||||||||||||||||||||| |||||    
T  34444873 aacctgagaccttggggaggagcacactctaaggtcccaagtcaataccaccaggccaac 34444814  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 14558053 - 14557973
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||||| ||||||  |||||||||||   ||| |||||||||||  |||||||||| ||| ||||||||||||||    
T  14558053 aaattgacaccgg-gagaatcgaacctgagacccggaggaggagcacacttccaggtcccaagccaacaccaccagaccaac 14557973  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 10338180 - 10338232
Alignment:
Q  116 aacctgagacctttaggtggagcacacttagaggtcccaagtcaataccacca 168  Q
    ||||||||||||| ||| ||||||||||   |||||||||| |||||||||||    
T  10338180 aacctgagaccttgaggaggagcacactcctaggtcccaagccaataccacca 10338232  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 28841509 - 28841457
Alignment:
Q  91 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 143  Q
    ||||||||| |||||||||||||  ||| ||||||||| ||| ||||||||||    
T  28841509 tctaaattgacaccggagagaatcgaacttgagaccttgaggaggagcacact 28841457  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 7949436 - 7949508
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaatacc 164  Q
    |||||||| |||| ||||||||  ||||||||||||| ||| ||||||||||  ||||||||||| |||||||    
T  7949436 ctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaatacc 7949508  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 5795393 - 5795474
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| ||| || |||||| |||||||||||||| ||| |||||| |||   |||| ||||||||| ||||||||||||||    
T  5795393 aaattggcactggggagaatcaaacctgagaccttgaggaggagcatactccaaggtgccaagtcaacaccaccagaccaac 5795474  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 175
Target Start/End: Original strand, 37109335 - 37109416
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||| ||||||||  ||||||||||||| ||| ||||||||||   |||||||||| ||||||||| || |||||    
T  37109335 aaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 37109416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 4249269 - 4249220
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacact 143  Q
    |||||| |||| |||||||| |||||||||||||| ||| ||||||||||    
T  4249269 aaattggcaccagagagaatcaaacctgagaccttgaggaggagcacact 4249220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 46295189 - 46295108
Alignment:
Q  94 aaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||| |||||| ||||||  ||||||||||||| ||| ||||||||||   | |||||||| ||| || |||||||||||    
T  46295189 aaattggcaccggggagaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaacactaccagaccaac 46295108  T

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Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 15305 - 15388
Alignment:
Q  92 ctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaac 175  Q
    |||||||| || | ||||||||  ||||||||||||  ||| ||||||||||   |||||||||| ||||||||||||||||||    
T  15305 ctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaac 15388  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 162990 - 163079
Alignment:
Q  91 tctaaattgccaccggagagaatgaaacctgagacctttaggtggagcacacttagaggtcccaagtcaataccaccagaccaactcaaa 180  Q
    ||||||||| |||||||||||||  ||||| |||||||  || ||||||||||   |||||  ||||||| ||||| |||||||| ||||    
T  162990 tctaaattgacaccggagagaatcgaacctcagaccttatggaggagcacactctcaggtcataagtcaaaaccactagaccaacccaaa 163079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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