View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_5 (Length: 606)
Name: NF7636_high_5
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 7 - 584
Target Start/End: Original strand, 8285118 - 8285695
Alignment:
| Q |
7 |
tttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccattggtgcacctgatgctgttccattcccca |
106 |
Q |
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| T |
8285118 |
tttggtgttgctacaacatcaagcaatgatgatgagtcagttgatcttgctcctcttcctcctactaccattggtgcacctgatgctgttccattcccca |
8285217 |
T |
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| Q |
107 |
ttattgatcatcgacatcaaggtaatcatcatcaagcgttacaaaactaatgattgaactcgagttgttattagttctaattaaagatgaattgtttaaa |
206 |
Q |
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| T |
8285218 |
ttattgatcatcgacatcaaggtaatcaatatcaagttttacaaaactaatgattgaactcgagtcattaatagttctaattaaagatgaattgtttaaa |
8285317 |
T |
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| Q |
207 |
acaaattgagtttaaattttagttggaacattttttctattagacttgccttttgattaagccaaactcgaaattaccaagcctctttctgagaatcaga |
306 |
Q |
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| T |
8285318 |
acaaattgagtttaaattttagttggaacattttttctattagacttgccttttgattaagccaaactcgaaattaccaagccgctttctgagaatcaga |
8285417 |
T |
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| Q |
307 |
cagttaaaacaacaaaaatatatcaatttttacatataatgctcccttaaaaacttgcacatatatatgcacccaaaatttaaagcaccgggtatgattt |
406 |
Q |
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| T |
8285418 |
cagtttaaacaacaaaaatatatcaatttttacatatattgctcccttaaaaacttgcacatatatatgcacccaaaatttaaagcaccgggtatgattt |
8285517 |
T |
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| Q |
407 |
cgtttaattatatcccttagacgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttgtctgtgt |
506 |
Q |
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| T |
8285518 |
cgtttaattatatcccttagacgtgtgcaatgtgcatgatttcatttagttgaagtttgtgtttccaagttgcatatgagagatgaattgttatttgtgt |
8285617 |
T |
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| Q |
507 |
gtttgtcaggatttggtgtggaagatgaagcggaaaaatgtacgttgattactaaggacgccgcattcaaggttgatg |
584 |
Q |
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| T |
8285618 |
gtttgtcaggatttggtgtggaagatgaagcggaaaaatgtatggtgattactaaggacgccgcattcaaggttgatg |
8285695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 34697227 - 34697367
Alignment:
| Q |
376 |
cacccaaaatttaaagcaccgggtatgatttcgtttaattatatcccttagacgtgtgcaatgtgcatgacttcatttagttgaagtttgtgtttccaag |
475 |
Q |
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| T |
34697227 |
cacccagaatttaaagcacggggtatggttatgttctataatatctcatggacgtgtgcaatgttcatggcttcatttggttgatgtttgtgctttcgag |
34697326 |
T |
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| Q |
476 |
ttgcatatgagagatgaattgttgtctgtgtgtttgtcagg |
516 |
Q |
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| T |
34697327 |
ttgcatatgactcataaattgttgtatgtgtgtttctcagg |
34697367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 533
Target Start/End: Original strand, 24968890 - 24968947
Alignment:
| Q |
474 |
agttgcatatgagagatgaattgttgtctgtgtgtttgtcaggatttggtgtggaagatg |
533 |
Q |
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| T |
24968890 |
agttgcatattacagatgaattgttg--tgtgtgtttgtcaggttttggtaaggaagatg |
24968947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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