View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7636_high_52 (Length: 291)
Name: NF7636_high_52
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 30333614 - 30333507
Alignment:
| Q |
78 |
caaacaaaaactgattaaatctctaaaattacatttctgcaattcaagg---tgtcacaacaagtgactttagggaattcaaacaaacgagactttaata |
174 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30333614 |
caaacaaaaactgattaaacctctaaaatcacatttctgcaatttgaggaagtgtcacaacaagtgactttagggcattcaaacaaacgagactttaata |
30333515 |
T |
|
| Q |
175 |
gtaaaagc |
182 |
Q |
| |
|
|||||||| |
|
|
| T |
30333514 |
gtaaaagc |
30333507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 30324927 - 30324862
Alignment:
| Q |
15 |
gttacaacatgcaatacaagaacctactcactcaagtactcacacacaaatccaatgaggttgcaa |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30324927 |
gttacaacatgcaatacaagaacctactcactcaagtactcacacacaaatacaatgaggttgcaa |
30324862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 30321810 - 30321775
Alignment:
| Q |
78 |
caaacaaaaactgattaaatctctaaaattacattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30321810 |
caaacaaaaactgattaaatctctaaaattatattt |
30321775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 30337704 - 30337670
Alignment:
| Q |
133 |
aacaagtgactttagggaattcaaacaaacgagac |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
30337704 |
aacaagtgactttagggaattcaaacaaacaagac |
30337670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University