View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_63 (Length: 253)

Name: NF7636_high_63
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_63
NF7636_high_63
[»] chr4 (14 HSPs)
chr4 (1-239)||(3957176-3957415)
chr4 (1-239)||(4023275-4023516)
chr4 (19-238)||(4000377-4000599)
chr4 (1-239)||(3921715-3921959)
chr4 (1-228)||(3985199-3985429)
chr4 (1-239)||(3815813-3816057)
chr4 (1-228)||(3808239-3808472)
chr4 (1-224)||(3935081-3935307)
chr4 (15-181)||(4008131-4008300)
chr4 (1-107)||(3936839-3936944)
chr4 (1-159)||(3800069-3800230)
chr4 (46-130)||(4016597-4016681)
chr4 (155-195)||(3934978-3935018)
chr4 (52-159)||(4217093-4217203)
[»] chr5 (1 HSPs)
chr5 (42-214)||(13396086-13396261)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3957415 - 3957176
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttctt-gttttccttgaattgt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3957415 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttctttgttttccttgaattgt 3957316  T
Q  100 tgagcaacagaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctttgatc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  3957315 tgagcaacagaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggtagagccacaagctttgagc 3957216  T
Q  200 aaaatcgtatgtctaatttacttagtcttttgagattctt 239  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  3957215 aaaatcgtatgtctaattttcttagtcttgtgagattctt 3957176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4023275 - 4023516
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgtt 100  Q
    ||||| || |||| ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4023275 aaattcatttgcagattcaacccaatatttatgagagaatgttcatccaagttccagcaattccagaactcaatccttttcttgttttccttgaattgtt 4023374  T
Q  101 gagcaacag---aagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctttga 197  Q
     || ||| |   ||||||| ||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||    
T  4023375 cagaaactgttgaagggaacaatacagtcttcagtgatctacattcaacaagtagagtttcaactgatgaaggaagctcgggtagaaccaggagctttga 4023474  T
Q  198 tcaaaatcgtatgtctaatttacttagtcttttgagattctt 239  Q
     |||||||||||||||||||| ||||||||| | ||||||||    
T  4023475 gcaaaatcgtatgtctaattttcttagtcttgtaagattctt 4023516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 4000377 - 4000599
Alignment:
Q  19 aacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaacag---aaggga 115  Q
    ||||||||||||| ||||||   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||  |   ||||||    
T  4000377 aacccaatatttacgagagaatgttcatccaagttgaagcaattccagaactcaatccttttcttgttttccttgaattgttcagaaattgttgaaggga 4000476  T
Q  116 aaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctttgatcaaaatcgtatgtctaa 215  Q
    | ||||||||||||| ||||  |||||||||||||||||||||||||||| |||||||| | ||||| |||| ||||||| | ||| |||||||||||||    
T  4000477 acaatacagtcttcagtgatatacattcaacaagtagagtttcaactgataaaggaagcacaggtagagccagaagctttaagcaatatcgtatgtctaa 4000576  T
Q  216 tttacttagtcttttgagattct 238  Q
    ||| ||||||||| | |||||||    
T  4000577 ttttcttagtcttgtaagattct 4000599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 3921959 - 3921715
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgtt 100  Q
    |||||||| |||| |||||||||||||||||| |||||   |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  3921959 aaattgatttgcagattcaacccaatatttatcagagaaagttcatccaagttgaagcaattccagaactcaacccttttcttgttttccttgaattgtt 3921860  T
Q  101 gagcaac---agaagggaaaaatacagtcttcaatgattcaca---ttcaacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctt 194  Q
     ||||||    |||||||| ||||||||||| | |||||||||    |||||||||||| ||||||||||||||||||||||||||||  ||| ||||||    
T  3921859 cagcaactgttgaagggaacaatacagtctttagtgattcacagttgtcaacaagtagactttcaactgatgaaggaagctcgggtagaaccagaagctt 3921760  T
Q  195 tgatcaaaatcgtatgtctaatttacttagtcttttgagattctt 239  Q
         |||||||||||| |||||| ||||||||| | ||||||||    
T  3921759 gttggaaaatcgtatgtataattttcttagtcttgtaagattctt 3921715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3985199 - 3985429
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgtt 100  Q
    |||||||| || | |||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  3985199 aaattgatttgaagattcaacccaatatttatgagagaacgttcatccaatttgaagcaattccagaactcaatccttttcttgttttcctttaattgtt 3985298  T
Q  101 gagcaac---agaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctttga 197  Q
     ||||||    |||||||||||||||| ||||| |||  |||| ||||||||||||||||||| |||||| |||||||| ||||| |||| |||||  ||    
T  3985299 cagcaactgttgaagggaaaaatacagacttcagtgacacacagtcaacaagtagagtttcaagtgatgatggaagctcaggtagagccagaagctccga 3985398  T
Q  198 tcaaaatcgtatgtctaatttacttagtctt 228  Q
     |||   | |||||||||||| |||||||||    
T  3985399 gcaatcgcttatgtctaattttcttagtctt 3985429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 3815813 - 3816057
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgtt 100  Q
    |||||||| || ||||||||||||| |||||||||||| | |||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||    
T  3815813 aaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttctcgcaattccagaactcaacacttttcttgttttccttgaattgtt 3815912  T
Q  101 gagcaac---agaagggaaaaatacagtcttcaatgattcaca---ttcaacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctt 194  Q
     ||||||    |||||||| ||||||||||||| |||   | |   || ||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  3815913 cagcaactgttgaagggaacaatacagtcttcagtgaaaaagaatctttaacaagtagagtttcaactgatgaaggaagctcgggtaaagccacaagctt 3816012  T
Q  195 tgatcaaaatcgtatgtctaatttacttagtcttttgagattctt 239  Q
      | |||  ||||||||||| ||| ||||||||| | ||||||||    
T  3816013 caagcaacctcgtatgtctagttttcttagtcttgtaagattctt 3816057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3808239 - 3808472
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgtt 100  Q
    |||||||| || ||||||||||||| |||||||||||| | |||||||||||||  ||||| |||||||||||  |||||||||||||||||||||||||    
T  3808239 aaattgatttgaacattcaacccaacatttatgagagaactttcatccaagttcttgcaatgccagaactcaacacttttcttgttttccttgaattgtt 3808338  T
Q  101 gagcaac---agaagggaaaaatacagtcttcaatgattcaca--ttc-aacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctt 194  Q
     ||||||    |||||||| ||||||||||||| ||||  |||  | | ||||||||||||||||||||||||||||||||||||||| | || ||||||    
T  3808339 cagcaactgttgaagggaacaatacagtcttcagtgatctacagctgctaacaagtagagtttcaactgatgaaggaagctcgggtagagacagaagctt 3808438  T
Q  195 tgatcaaaatcgtatgtctaatttacttagtctt 228  Q
    |   |||  | ||||||||||||| |||||||||    
T  3808439 tttgcaaccttgtatgtctaattttcttagtctt 3808472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3935307 - 3935081
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgtt 100  Q
    |||||||| |||| |||||||||||||||||| ||||| |  |||||||||||||||||||||||||||| ||    |||||||||||||||||||||||    
T  3935307 aaattgatttgcagattcaacccaatatttatcagagaacgctcatccaagttcaagcaattccagaacttaacttctttcttgttttccttgaattgtt 3935208  T
Q  101 gagcaacag---aagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctttga 197  Q
     |||||| |   ||||||| ||||||| ||||| ||| ||||| | |||||||||| ||||||||||||||| |||||||||||| |||| ||||||       
T  3935207 cagcaactgttgaagggaacaatacagacttcagtgagtcacagtgaacaagtagaatttcaactgatgaagaaagctcgggtagagccagaagcttgtt 3935108  T
Q  198 tcaaaatcgtatgtctaatttacttag 224  Q
      ||||||||||||||| ||| |||||    
T  3935107 ggaaaatcgtatgtctagttttcttag 3935081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 4008131 - 4008300
Alignment:
Q  15 attcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaacag---aa 111  Q
    ||||||| |||||||||| ||||| | || ||||| |||||| |||||||| |||  || ||||||||||||||||||||| |||| || | | |   ||    
T  4008131 attcaactcaatatttataagagaacgtttatccaggttcaaacaattccataacagaacccttttcttgttttccttgaactgttcagaagctgttaaa 4008230  T
Q  112 gggaaaaatacagtcttcaatgattcacattcaacaagtagagtttcaactgatgaaggaagctcgggta 181  Q
    |||||  |||||||||||| ||||||||||||| | | ||||||||||| |||||| |||||||| ||||    
T  4008231 gggaaccatacagtcttcagtgattcacattcagccaatagagtttcaagtgatgatggaagctctggta 4008300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3936944 - 3936839
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgtt 100  Q
    |||||||| || |||||||||||||||||||||||||| |||| |  ||||||| ||||||||||||||||||  ||||| ||||||||||| |||||||    
T  3936944 aaattgatttgaacattcaacccaatatttatgagagaacatttaatcaagttccagcaattccagaactcaactctttt-ttgttttcctttaattgtt 3936846  T
Q  101 gagcaac 107  Q
     ||||||    
T  3936845 cagcaac 3936839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 3800069 - 3800230
Alignment:
Q  1 aaattgatctgcacattcaacccaatatttatgagagagcattcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgtt 100  Q
    ||||| ||||| | |||||||| | ||| |||||||||   ||| || ||||||||||||||||| || | |||| |||||||||||||||| ||||||     
T  3800069 aaattaatctgtagattcaaccaattatgtatgagagaaagttcttcaaagttcaagcaattccaaaagttaatcattttcttgttttcctttaattgtc 3800168  T
Q  101 gagcaac---agaagggaaaaatacagtcttcaatgattcacattcaacaagtagagtttca 159  Q
     ||||||    |||||||| |||||||  |||| ||| | | | | ||||||||||||||||    
T  3800169 cagcaactgttgaagggaacaatacagcattcagtgacttatagtgaacaagtagagtttca 3800230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 4016597 - 4016681
Alignment:
Q  46 tccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaacagaagggaaaaatacagtcttca 130  Q
    ||||| ||||||||||||   ||| ||| ||||||| |||| ||||||||||||| |||||  |||||||| || ||||||||||    
T  4016597 tccaatttcaagcaattcgcaaacacaacccttttcctgttctccttgaattgttcagcaattgaagggaacaacacagtcttca 4016681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 3935018 - 3934978
Alignment:
Q  155 tttcaactgatgaaggaagctcgggtagggccacaagcttt 195  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  3935018 tttcaactgataaaggaagctcgggtagagccagaagcttt 3934978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 4217093 - 4217203
Alignment:
Q  52 ttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaac---agaagggaaaaatacagtcttcaatgattcacattcaacaa 148  Q
    |||||||||||||| || | |||| |||||||||||||||| ||||||  ||||||    |||||||| |||||||  |||| ||| | | | | |||||    
T  4217093 ttcaagcaattccaaaagttaatcattttcttgttttcctttaattgtccagcaactgttgaagggaacaatacagcattcagtgacttatagtgaacaa 4217192  T
Q  149 gtagagtttca 159  Q
    |||||||||||    
T  4217193 gtagagtttca 4217203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 13396086 - 13396261
Alignment:
Q  42 ttcatccaagttcaagcaattccagaactcaatccttttcttgttttccttgaattgttgagcaac---agaagggaaaaatacagtcttcaatgattca 138  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  | |||    |||||||| | ||||| ||||| ||| | |    
T  13396086 ttcatccaagttcaagcaattccaaaactctatccttttcttgttttccttgaattgttcggtaacttttgaagggaacactacagacttcagtgactta 13396185  T
Q  139 cattcaacaagtagagtttcaactgatgaaggaagctcgggtagggccacaagctttgatcaaaatcgtatgtcta 214  Q
    |||||||||| ||||||||||| ||||||||||||| | ||||  |||| ||||||||| || ||| |||||||||    
T  13396186 cattcaacaattagagtttcaagtgatgaaggaagcacaggtacagccagaagctttgagcagaattgtatgtcta 13396261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University