View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_69 (Length: 243)

Name: NF7636_high_69
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_69
NF7636_high_69
[»] chr3 (17 HSPs)
chr3 (10-243)||(20046336-20046566)
chr3 (28-212)||(20015891-20016075)
chr3 (10-177)||(17114992-17115159)
chr3 (29-177)||(19858348-19858496)
chr3 (29-217)||(20036294-20036482)
chr3 (32-217)||(26647240-26647425)
chr3 (29-217)||(19838632-19838820)
chr3 (29-177)||(19849269-19849423)
chr3 (29-212)||(19956328-19956511)
chr3 (106-217)||(26653388-26653499)
chr3 (30-195)||(19832130-19832295)
chr3 (29-217)||(19818793-19818987)
chr3 (107-177)||(19989801-19989871)
chr3 (70-212)||(19951365-19951507)
chr3 (28-177)||(24839667-24839816)
chr3 (70-217)||(19812516-19812669)
chr3 (32-177)||(19943993-19944138)
[»] chr5 (2 HSPs)
chr5 (29-217)||(9815273-9815461)
chr5 (30-217)||(26354619-26354806)
[»] chr7 (6 HSPs)
chr7 (22-205)||(12497457-12497639)
chr7 (22-205)||(12521322-12521504)
chr7 (27-211)||(12579780-12579963)
chr7 (22-191)||(12495679-12495847)
chr7 (22-95)||(12519480-12519553)
chr7 (24-129)||(12581647-12581752)
[»] chr4 (2 HSPs)
chr4 (21-211)||(6397422-6397612)
chr4 (67-211)||(6398506-6398650)
[»] chr8 (2 HSPs)
chr8 (106-202)||(22689444-22689540)
chr8 (107-173)||(11544353-11544419)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 20046566 - 20046336
Alignment:
Q  10 aagaatatcaccgacagttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattg 109  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  20046566 aagaaaatcatcgacagttgagtctaatgccaacttaacattatcaattttcaatgcgtgaaccttatgccacctaaacaataaagggtcgctgggattg 20046467  T
Q  110 atcaacatgggttgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctat 209  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  20046466 atcaacatgggttgtggtggtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggtgatagaatagtaaattcaacaggaaatctat 20046367  T
Q  210 cacaaccaccaactggatcttttaccagatcaat 243  Q
    |   ||||||||| |||| ||||| |||||||||    
T  20046366 c---accaccaaccggatattttaacagatcaat 20046336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 20015891 - 20016075
Alignment:
Q  28 tgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggt 127  Q
    |||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||    
T  20015891 tgagtctaatgccaccataacattgtcaattttcaaagcctgaaccttatgccacctaaacaataaagggtcttcatgattgatcaacatgggttgtggt 20015990  T
Q  128 tgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatcac 212  Q
    |||||  ||  |||||||||||||||||||| |||||||||||||| ||| ||| |||  |||||||| | |||| | |||||||    
T  20015991 tgtaaaattttgaacctctcccacacccaaatttgaaccaaataaatgggtgattgaagtgtaacttctaaaggatacctatcac 20016075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 17115159 - 17114992
Alignment:
Q  10 aagaatatcaccgacagttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattg 109  Q
    ||||| |||| |||||| | |||||||||| | ||||||||| ||||||||||  ||||||||| ||||||||||||||||||||| ||| |   | |||    
T  17115159 aagaaaatcatcgacagctaagtctaatgctagcttaacattgtcaattttcacggcctgaaccctatgccacctaaacaataaagggtctccatggttg 17115060  T
Q  110 atcaacatgggttgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaaggg 177  Q
    |||||||||| |||||||||||| |||  |||||||||||||| ||||| ||||||||| ||||||||    
T  17115059 atcaacatggattgtggttgtaaatttttgaacctctcccacatccaaatttgaaccaagtaaaaggg 17114992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 19858496 - 19858348
Alignment:
Q  29 gagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggtt 128  Q
    ||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||  || |   | |||||||||||||||||||| |    
T  19858496 gagtctaatgccaacttaacattgtcaactttcaaggccttaaccttatgccacctaaacaataaaggttctccatgcttgatcaacatgggttgtggct 19858397  T
Q  129 gtaattttgcgaacctctcccacacccaaacttgaaccaaataaaaggg 177  Q
     ||| |||  |||||| ||||| ||||||||||||| ||| ||||||||    
T  19858396 ctaaatttttgaacctttcccaaacccaaacttgaagcaagtaaaaggg 19858348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 217
Target Start/End: Original strand, 20036294 - 20036482
Alignment:
Q  29 gagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggtt 128  Q
    ||||||||||||| | ||||||| |||||  |||| | || ||||||||||||||||||||| |||| ||| |   | || | |||||||||||||||||    
T  20036294 gagtctaatgccatcctaacattgtcaatcatcaagggcttaaccttatgccacctaaacaaaaaagggtccccatggttcaacaacatgggttgtggtt 20036393  T
Q  129 gtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatcacaacca 217  Q
    |||| |||  |||||||||||||||||||| ||||||||| |||||||| |||  || ||||||||| | ||||| |||||||| ||||    
T  20036394 gtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattcaagagtaacttctaaaggaagtctatcaccacca 20036482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 217
Target Start/End: Complemental strand, 26647425 - 26647240
Alignment:
Q  32 tctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggttgta 131  Q
    |||| |||| |||||||| | |||||||||||   || ||||||||||||||||||||| |||| ||| |   | ||||||||  |||||||||||||||    
T  26647425 tctagtgcccacttaacactgtcaattttcaagatcttaaccttatgccacctaaacaacaaagggtctccttggttgatcaaattgggttgtggttgta 26647326  T
Q  132 attttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatcacaacca 217  Q
    | |||  |||||| ||||||||||||| ||||||||| |||||||| ||| ||| ||||||||| | |||| ||||||||| ||||    
T  26647325 aatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttccaaaggatatctatcaccacca 26647240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 19838820 - 19838632
Alignment:
Q  29 gagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggtt 128  Q
    |||||||| |||| | ||| ||| |||||| |||| |||| ||| ||||||||||||||||| |||| ||| |   | || | |||||| ||||||||||    
T  19838820 gagtctaaagccatcctaatattgtcaattatcaaggccttaactttatgccacctaaacaaaaaagggtccccctggttcaacaacattggttgtggtt 19838721  T
Q  129 gtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatcacaacca 217  Q
    |||| |||  |||||||||||||||||||| ||||||||| |||||||| ||| ||| ||||||||| | |||| || |||||||||||    
T  19838720 gtaaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatgtatcacaacca 19838632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 19849423 - 19849269
Alignment:
Q  29 gagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatg------ggtt 122  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||  || |   | ||| ||||||||      || |    
T  19849423 gagtctaatgccaacctaacattgtcaattttcaaggcctgaaccttatgccatctaaacaataaaggatccccatggttggtcaacatggtttgtggct 19849324  T
Q  123 gtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaaggg 177  Q
    ||||||| || |||  |||||||||||||||||||| ||||||||||||||||||    
T  19849323 gtggttgcaaatttttgaacctctcccacacccaaatttgaaccaaataaaaggg 19849269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 19956511 - 19956328
Alignment:
Q  29 gagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggtt 128  Q
    ||||||||||||| | ||||||| |||| | |||| | || ||||||||||||||||||||| |||| ||  ||  | || | ||||||||||||||| |    
T  19956511 gagtctaatgccatcctaacattgtcaactatcaagggcttaaccttatgccacctaaacaaaaaagggttcctatggttcaacaacatgggttgtggct 19956412  T
Q  129 gtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatcac 212  Q
    |||| |||  |||||| ||||||||||||| ||||||||| |||||||| ||| ||| ||||| |||   |||| |||||||||    
T  19956411 gtaaatttttgaacctttcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaagttctgaaggatatctatcac 19956328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 26653499 - 26653388
Alignment:
Q  106 attgatcaacatgggttgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaat 205  Q
    |||||||||| ||||||||||||| || |||| |||||||||||||||||||| ||||||||| |||||||| ||| | | | ||||||| | |||||||    
T  26653499 attgatcaacttgggttgtggttgcaaatttgtgaacctctcccacacccaaatttgaaccaagtaaaagggtgatcgtagattaacttccaaaggaaat 26653400  T
Q  206 ctatcacaacca 217  Q
    ||||||| ||||    
T  26653399 ctatcaccacca 26653388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 19832295 - 19832130
Alignment:
Q  30 agtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggttg 129  Q
    |||||||||||| | ||||||| ||||||  ||| |||| ||||||||||||||||||||| || |  || |     || | ||||||||||||||| ||    
T  19832295 agtctaatgccatcctaacattgtcaattaccaaggccttaaccttatgccacctaaacaaaaatggttcccctttgttcaacaacatgggttgtggatg 19832196  T
Q  130 taattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttc 195  Q
    ||| |||  |||||||||||||||||||| ||||||||| |||||||| ||| ||| |||||||||    
T  19832195 taaatttttgaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttc 19832130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 19818987 - 19818793
Alignment:
Q  29 gagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtgg-- 126  Q
    ||||||||||||| | ||||||| ||||||| ||| |||||||| | ||||||||||||||| |||| ||| |   | || |||||||||| ||||||      
T  19818987 gagtctaatgccatcctaacattgtcaatttccaaggcctgaacatcatgccacctaaacaaaaaagggtctccatggtttatcaacatggtttgtggca 19818888  T
Q  127 ----ttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatcacaacca 217  Q
        ||| |  |||  |||||||||||||||||| | |||||||||||||||||| ||| ||| ||||| ||| | |||||||||||||| ||||    
T  19818887 gtggttgcatatttttgaacctctcccacacccatatttgaaccaaataaaagggtgattgaagagtaagttctaaaggaaatctatcaccacca 19818793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 19989871 - 19989801
Alignment:
Q  107 ttgatcaacatgggttgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaaggg 177  Q
    ||||||| |||||||||||||||||| |||  |||||||||||| ||||||||||||||||| ||||||||    
T  19989871 ttgatcagcatgggttgtggttgtaaatttttgaacctctcccaaacccaaacttgaaccaagtaaaaggg 19989801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 212
Target Start/End: Complemental strand, 19951507 - 19951365
Alignment:
Q  70 aaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaa 169  Q
    ||||||||||||||||||||| |||| ||| |   | || |||  |||||||||||||||||| |||   ||||||||||| | ||||| |||||||||     
T  19951507 aaccttatgccacctaaacaaaaaagggtctccatggtttatcggcatgggttgtggttgtaaatttttaaacctctcccaaatccaaatttgaaccaag 19951408  T
Q  170 taaaagggggatagaatagtaacttcaacaggaaatctatcac 212  Q
    |||||||| ||| ||| ||||| ||| | |||| |||||||||    
T  19951407 taaaagggtgattgaagagtaagttctaaaggatatctatcac 19951365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 24839667 - 24839816
Alignment:
Q  28 tgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggt 127  Q
    |||||||||||||||| | ||||| ||||||||||| |||| ||| ||||||||||| ||||||| |  ||| |    ||||  |||| ||||||||||     
T  24839667 tgagtctaatgccaacctcacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctcgattattgcccaacttgggttgtggc 24839766  T
Q  128 tgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaaggg 177  Q
    || || |||  |||||| ||||| ||||||||||||||||  ||||||||    
T  24839767 tgcaaatttttgaacctttcccaaacccaaacttgaaccaggtaaaaggg 24839816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 217
Target Start/End: Complemental strand, 19812669 - 19812516
Alignment:
Q  70 aaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgg------gttgtggttgtaattttgcgaacctctcccacacccaaacttga 163  Q
    ||||||||||||||||||||| |||| |||||   | ||||||||||| |      |||||||||| || |||  |||||||||||| ||||||| ||||    
T  19812669 aaccttatgccacctaaacaaaaaagggtcgccatggttgatcaacatagtttgttgttgtggttgcaaatttttgaacctctcccaaacccaaatttga 19812570  T
Q  164 accaaataaaagggggatagaatagtaacttcaacaggaaatctatcacaacca 217  Q
    ||||| |||||||| ||| ||| |||||  || |  ||||||||||||| ||||    
T  19812569 accaagtaaaagggtgattgaagagtaatctccaagggaaatctatcaccacca 19812516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 177
Target Start/End: Complemental strand, 19944138 - 19943993
Alignment:
Q  32 tctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggttgta 131  Q
    ||||||||||||   ||||| ||||||||||| |||| ||| ||||||||||| ||||||| |  ||| |    |||||||||| | |||||||| || |    
T  19944138 tctaatgccaaccccacattgtcaattttcaaggccttaacattatgccacctcaacaatacatggtctccattattgatcaactttggttgtggctgca 19944039  T
Q  132 attttgcgaacctctcccacacccaaacttgaaccaaataaaaggg 177  Q
    | |||  |||||| ||||| ||||||||||||||||  ||||||||    
T  19944038 aatttttgaacctttcccaaacccaaacttgaaccaggtaaaaggg 19943993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 9815461 - 9815273
Alignment:
Q  29 gagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggtt 128  Q
    ||||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||| | | |||||||||||||||||| ||| |    
T  9815461 gagtctaatgccagcttaacattgtcaattttcaaggcctgaaccttatgtcacctaaacaataaagggtctccgtgattgatcaacatgggttctggct 9815362  T
Q  129 gtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatcacaacca 217  Q
    |||| |||  |||||||||||||||||||| ||||||||| |||||||| ||| ||| ||||||||| | |||| ||||||||| ||||    
T  9815361 gtaaattttggaacctctcccacacccaaatttgaaccaagtaaaagggtgattgaagagtaacttctaaaggatatctatcaccacca 9815273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 26354619 - 26354806
Alignment:
Q  30 agtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggttg 129  Q
    |||||||| ||| ||||||||| ||||||||||| || || ||| ||||||| ||||||||||||| ||| |   | ||||||||||||||||| |||||    
T  26354619 agtctaattccagcttaacattgtcaattttcaaggcttgtaccctatgccatctaaacaataaagggtctccacggttgatcaacatgggttgcggttg 26354718  T
Q  130 taattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatcacaacca 217  Q
    |||||||  |||||||||||||||||||| ||||||||| ||||| || ||| ||| ||||||||| | |||| ||||||||| ||||    
T  26354719 taattttttgaacctctcccacacccaaatttgaaccaagtaaaacggtgattgaagagtaacttctaaaggatatctatcaccacca 26354806  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 12497639 - 12497457
Alignment:
Q  22 gacagttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggt 121  Q
    |||||||||| |||||||  ||||||||||  |||||||||| ||| |||||||||||||||| |||||||||   ||  || | |||||||||||| ||    
T  12497639 gacagttgagcctaatgcacacttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagt 12497540  T
Q  122 tgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaat 205  Q
    |||||||| || ||||||| ||||||||| |||||||| |||||||| ||||| || || |||| ||||| |||||||| ||||    
T  12497539 tgtggttgcaagtttgcgagcctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaat 12497457  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 12521504 - 12521322
Alignment:
Q  22 gacagttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggt 121  Q
    |||||||||| |||||||  ||||||||||  |||||||||| ||| |||||||||||||||| |||||||||   ||  || | |||||||||||| ||    
T  12521504 gacagttgagcctaatgcacacttaacattgccaattttcaaggccagaaccttatgccacctcaacaataaatgttctatgtggttgatcaacatgagt 12521405  T
Q  122 tgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaat 205  Q
    |||||||| || ||||||| ||||||||| |||||||| |||||||| ||||| || || |||| ||||| |||||||| ||||    
T  12521404 tgtggttgcaagtttgcgagcctctccca-acccaaacatgaaccaagtaaaaaggtgagagaaaagtaaattcaacagaaaat 12521322  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 211
Target Start/End: Original strand, 12579780 - 12579963
Alignment:
Q  27 ttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtgg 126  Q
    ||||||||||||| ||||||||||| ||||||| ||| ||||||||||||| | |||||| |||||||| |||  || | |||||||| ||||| |||||    
T  12579780 ttgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgcggttgatcaatatggg-tgtgg 12579878  T
Q  127 ttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatca 211  Q
    |||  | |||| |||||||||||  | |||||||| | |||| ||||| || ||| ||| ||||| || ||||||| || |||||    
T  12579879 ttgatagtttgtgaacctctcccgtatccaaacttaagccaagtaaaaaggtgatggaagagtaaattaaacaggatatatatca 12579963  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 12495679 - 12495847
Alignment:
Q  22 gacagttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggt 121  Q
    |||| ||||||||||||| |||| |||||| ||||||| ||| ||||||||||||| | |||||| |||||||| |||  || | ||||| ||||||||     
T  12495679 gacacttgagtctaatgcaaactgaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaagggtctatgtggttgatgaacatggg- 12495777  T
Q  122 tgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaa 191  Q
    ||||||||  | |||| |||||||||||  | |||||||| | |||||||||| || |||| || |||||    
T  12495778 tgtggttgatagtttgtgaacctctcccgtatccaaacttaagccaaataaaaaggtgatataagagtaa 12495847  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 12519480 - 12519553
Alignment:
Q  22 gacagttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaag 95  Q
    |||| ||||||||||||| ||||||||||| ||||||| ||| ||||||||||||| | |||||| ||||||||    
T  12519480 gacacttgagtctaatgcaaacttaacattgtcaatttgcaaggcctgaaccttattcaacctaagcaataaag 12519553  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 12581752 - 12581647
Alignment:
Q  24 cagttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttg 123  Q
    |||||||| |||||||  ||||||||||   ||||||||| ||| |||||||||||||||| ||||||| |   |   || | |||||||||||||||||    
T  12581752 cagttgagcctaatgcacacttaacattgctaattttcaaggccagaaccttatgccacctcaacaatatatgttatatgtggttgatcaacatgggttg 12581653  T
Q  124 tggttg 129  Q
    ||||||    
T  12581652 tggttg 12581647  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 6397422 - 6397612
Alignment:
Q  21 cgacagttgagtctaatgccaacttaacattatcaattttcaatgcctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatggg 120  Q
    |||||||||||||| |||||||||||| ||| |||||||| || ||||||||||||| ||||||||| ||||||| |||  || |  | |||||||| ||    
T  6397422 cgacagttgagtctcatgccaacttaatattgtcaattttaaaggcctgaaccttataccacctaaaaaataaagggtctatgtgggtaatcaacatagg 6397521  T
Q  121 ttgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacaggaaatctatca 211  Q
    |||||   | || | || |||||||| |||| |||||||||||||||| ||||| || ||||||| ||||| ||||||| ||||| |||||    
T  6397522 ttgtgaacgcaaatgtgtgaacctcttccacgcccaaacttgaaccaagtaaaaaggtgatagaagagtaaattcaacatgaaatttatca 6397612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 6398650 - 6398506
Alignment:
Q  67 ctgaaccttatgccacctaaacaataaagtgtcgctgggattgatcaacatgggttgtggttgtaattttgcgaacctctcccacacccaaacttgaacc 166  Q
    |||||||||||||  | |||||||||||| ||  |||   |||||||||||| |||||||||| || |||| |||||||||||||||| |||||||||||    
T  6398650 ctgaaccttatgcttcttaaacaataaagagtgtctgttgttgatcaacatgagttgtggttgcaagtttgtgaacctctcccacacctaaacttgaacc 6398551  T
Q  167 aaataaaagggggatagaatagtaacttcaacaggaaatctatca 211  Q
    |  ||||| || || |  | ||||| |||||||||||||||||||    
T  6398550 acgtaaaaaggtgacaacagagtaaattcaacaggaaatctatca 6398506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 22689444 - 22689540
Alignment:
Q  106 attgatcaacatgggttgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaaagggggatagaatagtaacttcaacagga 202  Q
    |||||||||||||||  ||||||| || |||  |||||||||||||||||||||||||||||| |||||||| ||| | | | |||| |||||||||    
T  22689444 attgatcaacatgggccgtggttgcaaatttttgaacctctcccacacccaaacttgaaccaagtaaaagggtgattgcagattaacatcaacagga 22689540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 11544419 - 11544353
Alignment:
Q  107 ttgatcaacatgggttgtggttgtaattttgcgaacctctcccacacccaaacttgaaccaaataaa 173  Q
    ||||||||| |||||| |||||| || |||  |||||||||||| ||||||||||||||||| ||||    
T  11544419 ttgatcaacttgggttttggttgcaaatttttgaacctctcccaaacccaaacttgaaccaagtaaa 11544353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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