View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_70 (Length: 241)
Name: NF7636_high_70
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4368353 - 4368575
Alignment:
| Q |
1 |
ctttatcgaaacatttcaacaaaaaagcaaatcttattttcaaaggagcttacaatgacatagatactagagaaactggcaattgtccagtatcttccca |
100 |
Q |
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| T |
4368353 |
ctttatcaaaacatttcaacaaaaaagcaaatgttattttcaaaagagcttacaatgacatagatactcgagaaactggcaattgtccagtatcttccca |
4368452 |
T |
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| Q |
101 |
agtatgcatcagcaaaaaaggctccaagcaatggtgtgatgtaacatgttcccgaccaagttgtgacagtatttgcagcagctgcatttccaagtccgta |
200 |
Q |
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| T |
4368453 |
agtatgcatcagctaaaaaggctccaagcaatggtgtgatgtaacatgttcccgaccaagttgtgacagtatttgcagcagctgcatttccaagtccgta |
4368552 |
T |
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| Q |
201 |
acggtcttcgagatagttcacca |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4368553 |
acggtcttcgagatagttcacca |
4368575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 24498111 - 24498253
Alignment:
| Q |
49 |
cttacaatgacatagatactagagaaactggcaattgtccagtatcttcccaagtatgcatcagcaaaaaaggctccaagcaatggtgtgatgtaacatg |
148 |
Q |
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|||||||| ||||||||| |||||| || ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| |
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| T |
24498111 |
cttacaattacatagataacagagaagctagcaattgtccaatatcttcccaagtatgaatcagctaaaaaggctccaagcaatggtgtgatgtagcatg |
24498210 |
T |
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| Q |
149 |
ttcccgaccaagttgtgacagtatttgcagcagctgcatttcc |
191 |
Q |
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| T |
24498211 |
tgcctgaccaagttgtgacacttttagcagcagctgcatttcc |
24498253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 25074525 - 25074601
Alignment:
| Q |
76 |
ctggcaattgtccagtatcttcccaagtatgcatcagcaaaaaaggctccaagcaatggtgtgatgtaacatgttcc |
152 |
Q |
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|||||||| |||||||||||||| | || | |||||| | ||| ||||||| |||||||||||||| |||||||| |
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| T |
25074525 |
ctggcaatggtccagtatcttccaagataggaatcagccacaaatgctccaattaatggtgtgatgtagcatgttcc |
25074601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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