View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_high_73 (Length: 240)

Name: NF7636_high_73
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_high_73
NF7636_high_73
[»] chr4 (13 HSPs)
chr4 (16-240)||(3957516-3957740)
chr4 (57-240)||(4022997-4023180)
chr4 (100-240)||(3984964-3985104)
chr4 (23-233)||(4007805-4008015)
chr4 (28-217)||(4000013-4000202)
chr4 (119-239)||(3808083-3808203)
chr4 (112-240)||(3922057-3922185)
chr4 (159-239)||(3815697-3815777)
chr4 (23-128)||(3998814-3998919)
chr4 (112-183)||(3935474-3935545)
chr4 (189-231)||(4000210-4000252)
chr4 (195-239)||(3935406-3935450)
chr4 (31-83)||(3935574-3935626)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 3957740 - 3957516
Alignment:
Q  16 catgaagatactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaatttggtaacaaaattgggagtccttggcaagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957740 catgaagatactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaatttggtaacaaaattgggagtccttggcaagg 3957641  T
Q  116 atgaagcaaaaaacaaagcccaacaaaggggagaggaaaaaaggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaa 215  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  3957640 atggagcaaaaaacaaagcccaacaaaggggagaggaaaaaaggagagagatcaataatcatatcatcctgtgctgtcctgtacttgaaccactctggaa 3957541  T
Q  216 cactacttccaggatacaaatacac 240  Q
    |||||||||||||||||||||||||    
T  3957540 cactacttccaggatacaaatacac 3957516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 240
Target Start/End: Original strand, 4022997 - 4023180
Alignment:
Q  57 catcaattgtagtgatattcaattcaatttggtaacaaaattgggagtccttggcaaggatgaagcaaaaaacaaagcccaacaaaggggagaggaaaaa 156  Q
    ||||| |||||||||| |||||||||||| ||| |||| | |||  |||||| |||||||  ||||||||||||||||||| ||||||||||||  ||      
T  4022997 catcatttgtagtgatgttcaattcaattcggtcacaataatggatgtccttagcaaggacaaagcaaaaaacaaagcccagcaaaggggagagataatg 4023096  T
Q  157 aggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaatacac 240  Q
     ||||||||||||| |||||| ||||| | || |||| ||||||| ||||||||||||| ||||||||||||||| | ||||||    
T  4023097 tggagagagatcaacaatcatgtcatcctttgttgtcttgtactccaaccactctggaatactacttccaggataaacatacac 4023180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 100 - 240
Target Start/End: Original strand, 3984964 - 3985104
Alignment:
Q  100 ggagtccttggcaaggatgaagcaaaaaacaaagcccaacaaaggggagaggaaaaaaggagagagatcaataatcatatcatcatgtgctgtcctgtac 199  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||   |   || |||||||||| |||||||||||  | || |||| |||||    
T  3984964 ggagtcctcggcaaggatgaagcagaaaacaaagcccaacaaaggggagagatgaggtggtgagagatcaacaatcatatcattctttgttgtcttgtac 3985063  T
Q  200 tcgaaccactctggaacactacttccaggatacaaatacac 240  Q
    || ||||||||||||||||||||||||||||| | ||||||    
T  3985064 tccaaccactctggaacactacttccaggatatacatacac 3985104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 4007805 - 4008015
Alignment:
Q  23 atactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaatttggtaacaaaattgggagtccttggcaaggatgaagc 122  Q
    |||||||||||||||||||| |||||||||    ||||||||||| |||| || || |||||||| | ||||  |||| | ||||  |||||||||||||    
T  4007805 atactgacaccatccttttcatcatcatccttgtcatcaattgtactgatgttgaactcaatttgttcacaatgttggtaatcctcagcaaggatgaagc 4007904  T
Q  123 aaaaaacaaagcccaacaaaggggagaggaaaaaaggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactact 222  Q
    |||||||||||||||||||||||| |||   |   ||| ||||||||| |||||||||||| |||| |||  ||||| | |||||||| |||||  ||||    
T  4007905 aaaaaacaaagcccaacaaaggggggagatgatttggaaagagatcaacaatcatatcatcctgtgttgttttgtacgccaaccactcaggaacggtact 4008004  T
Q  223 tccaggataca 233  Q
    ||| |||||||    
T  4008005 tcctggataca 4008015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 4000013 - 4000202
Alignment:
Q  28 gacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaatttggtaacaaaattgggagtccttggcaaggatgaagcaaaaa 127  Q
    |||||||||||||||  ||||| || |||||||||||| |||||| |||||| |||||| ||||||| | | |||| |||| |||||||  |||||||||    
T  4000013 gacaccatccttttcaccatcaccctcaacatcaattgcagtgatgttcaatacaattttgtaacaataattggagaccttagcaaggacaaagcaaaaa 4000112  T
Q  128 acaaagcccaacaaaggggagaggaaaaaaggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaaca 217  Q
    |||||||||||||||| ||||||   ||  ||||||| || || |||||| ||||| | || |||| ||||||| ||||||||| |||||    
T  4000113 acaaagcccaacaaagaggagagatgaagtggagagatattaacaatcatgtcatcctctgttgtcttgtactccaaccactctcgaaca 4000202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 3808083 - 3808203
Alignment:
Q  119 aagcaaaaaacaaagcccaacaaaggggagaggaaaaaaggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacac 218  Q
    ||||||||||||||||||||||| |||||||||  |   ||||||||||||| |||| | ||||| | || |||| ||||||| |||||||||||||||     
T  3808083 aagcaaaaaacaaagcccaacaagggggagaggtgaggtggagagagatcaacaatcttgtcatcctttgttgtcttgtactcaaaccactctggaacat 3808182  T
Q  219 tacttccaggatacaaataca 239  Q
    ||||||||||||||| |||||    
T  3808183 tacttccaggatacacataca 3808203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 3922185 - 3922057
Alignment:
Q  112 aaggatgaagcaaaaaacaaagcccaacaaaggggagaggaaaaaaggagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactct 211  Q
    |||||| |||||||||||||| |||||||||||||||||   ||  ||||||||||||| ||||||  ||||   || |||| ||||||| ||||||| |    
T  3922185 aaggataaagcaaaaaacaaaacccaacaaaggggagagatgaagtggagagagatcaacaatcatgccatccattgttgtcttgtactccaaccacttt 3922086  T
Q  212 ggaacactacttccaggatacaaatacac 240  Q
    |||||||||||||||||||||| ||||||    
T  3922085 ggaacactacttccaggatacacatacac 3922057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 239
Target Start/End: Original strand, 3815697 - 3815777
Alignment:
Q  159 gagagagatcaataatcatatcatcatgtgctgtcctgtactcgaaccactctggaacactacttccaggatacaaataca 239  Q
    ||||||||||||||||||||||||| | || |||| ||||||| ||||||||||||| ||||||||||||||||| |||||    
T  3815697 gagagagatcaataatcatatcatcctttgttgtcttgtactccaaccactctggaatactacttccaggatacacataca 3815777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 3998814 - 3998919
Alignment:
Q  23 atactgacaccatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaatttggtaacaaaattgggagtccttggcaaggatgaagc 122  Q
    ||||||||||| |||||||| |||||||||    |||||||||||||||| || || ||||||||   ||||  |||| ||||||  |||||||||||||    
T  3998814 atactgacaccgtccttttcatcatcatccttgtcatcaattgtagtgatgttgaactcaatttgtgcacaatgttggtagtcctcagcaaggatgaagc 3998913  T
Q  123 aaaaaa 128  Q
    ||||||    
T  3998914 aaaaaa 3998919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 183
Target Start/End: Complemental strand, 3935545 - 3935474
Alignment:
Q  112 aaggatgaagcaaaaaacaaagcccaacaaaggggagaggaaaaaaggagagagatcaataatcatatcatc 183  Q
    |||||| |||||||||||||| |||||||||||||||||   ||  ||||||||||||| |||||| |||||    
T  3935545 aaggataaagcaaaaaacaaaacccaacaaaggggagagatgaagtggagagagatcaacaatcatgtcatc 3935474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 4000210 - 4000252
Alignment:
Q  189 ctgtcctgtactcgaaccactctggaacactacttccaggata 231  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  4000210 ctgtcttgtactccaaccactctggaacactacttccaggata 4000252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 3935450 - 3935406
Alignment:
Q  195 tgtactcgaaccactctggaacactacttccaggatacaaataca 239  Q
    ||||||| ||||| ||||||||||||||||||| ||||| |||||    
T  3935450 tgtactcaaaccaatctggaacactacttccagaatacacataca 3935406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 3935626 - 3935574
Alignment:
Q  31 accatccttttcttcatcatccacaacatcaattgtagtgatattcaattcaa 83  Q
    ||||||||||||  ||||| || ||||||||||||||||||| || |||||||    
T  3935626 accatccttttcaccatcaccctcaacatcaattgtagtgatgttgaattcaa 3935574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University