View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_86 (Length: 206)
Name: NF7636_high_86
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_86 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 6156540 - 6156401
Alignment:
| Q |
47 |
tcagatcttacccgagacaaagaacctctaagctggagatctcgaatgaagattgctgttggagcagctcggggtcttgagtatctccattgtaatgctg |
146 |
Q |
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| T |
6156540 |
tcagatcttacccgagacaaagaacctctaagctggagatctcgaatgaagattgctgttggagcagctcggggtcttgagtatctccattgtaatgctg |
6156441 |
T |
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| Q |
147 |
aaccgtctgttatctatcgagacatgaaatctgccaacat |
186 |
Q |
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| T |
6156440 |
aaccgtctgttatctatcgagacatgaaatctgccaacat |
6156401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 54032216 - 54032077
Alignment:
| Q |
47 |
tcagatcttacccgagacaaagaacctctaagctggagatctcgaatgaagattgctgttggagcagctcggggtcttgagtatctccattgtaatgctg |
146 |
Q |
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||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || | |
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| T |
54032216 |
tcagatcttccccaagacaaagaacctctaagctggagttctcgaatgaagattgctgttggagcagctcgtggccttgagtatctccactgtaaagcag |
54032117 |
T |
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| Q |
147 |
aaccgtctgttatctatcgagacatgaaatctgccaacat |
186 |
Q |
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| T |
54032116 |
atccgcctgtcatatatcgagacttaaaatctgcaaacat |
54032077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 56020841 - 56020710
Alignment:
| Q |
47 |
tcagatcttacccgagacaaagaacctctaagctggagatctcgaatgaagattgctgttggagcagctcggggtcttgagtatctccattgtaatgctg |
146 |
Q |
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|||||| |||||| |||||||| || |||| ||||| ||||| || |||||| || |||||||||||| ||||||||||||||||| ||| | | || |
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| T |
56020841 |
tcagatgttacccaagacaaagctccattaagttggagctctcggataaagatttctcttggagcagctcaaggtcttgagtatctccactgtcaagttg |
56020742 |
T |
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| Q |
147 |
aaccgtctgttatctatcgagacatgaaatct |
178 |
Q |
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| || | |||||| |||||||| |||||||| |
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| T |
56020741 |
atccaccggttatccatcgagacttgaaatct |
56020710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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