View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_high_9 (Length: 532)
Name: NF7636_high_9
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 14 - 520
Target Start/End: Original strand, 6119574 - 6120082
Alignment:
| Q |
14 |
acaatggtatttttagacttgtaacacaagtaaaatagttacacaactaactactaactaacagcaagtttggtattttcctaactaatcatggttgaat |
113 |
Q |
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| T |
6119574 |
acaatggtatttttagacttgtaacacaagtaaaatagttacacaactaactactaactaacagcaagtttggtattttcctaactaatcatggttgaat |
6119673 |
T |
|
| Q |
114 |
tagtcacaacattctcccttaattcaacctcttattcatcaaattgaattacacctagttcatc---aagtaacaaaaatccgtcaactttcgctccatt |
210 |
Q |
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| T |
6119674 |
tagtcacaacattctcccttaattcaacctcttattcatcaaattgaattacacctagttcatctctaagtaacaaaaatccgtcaactttcgctccatt |
6119773 |
T |
|
| Q |
211 |
agtcaaggcatctgcaatttgagactcagttggacaatgcatcactttaagccttccattgttcaccttctctcttaggaaataaaatattacccctatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6119774 |
agtcaaggcatctgcaatttgagactcagttggacaatgcatcactttaagccttccattgttcaccttctctcttaggaaataaaatat-acccctatg |
6119872 |
T |
|
| Q |
311 |
tgtttgcttctgccatttaacaatgggttcttcgctagatttattgctgacttgttaccaattagaagtttgattgatttcttcacttcaaccattagct |
410 |
Q |
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| T |
6119873 |
tgtttgcttctgccatgtaacaatgggttcttcgctagatttattgctgacttgttatcaattagaagtttgattgatttcttcacttcaaccattagct |
6119972 |
T |
|
| Q |
411 |
ccttaagcacaaatccaaaccaaattgcttgacaggcagcatatgatcctgctatgtactcagtctcgcatgatgataatgccaccatatgttgattctt |
510 |
Q |
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| T |
6119973 |
ccttaagcacaaatccaaaccaaattgcttgacaggcagcatatgatcctgctatgtactcagtctcgcatgatgataatgccaccatatgttgattctt |
6120072 |
T |
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| Q |
511 |
ttaacaccaa |
520 |
Q |
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|||||||||| |
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| T |
6120073 |
ttaacaccaa |
6120082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 101 - 252
Target Start/End: Complemental strand, 6172813 - 6172659
Alignment:
| Q |
101 |
atcatggttgaattagtcacaacattctcccttaattcaacctcttattcatcaaattgaattacacctagttcatc---aagtaacaaaaatccgtcaa |
197 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| | ||||||||||| |||||||||||| || |||| |
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| T |
6172813 |
atcatggttgaattactcacaccattctctcttaattcaaccttgtattcatcaaattgaatttctcctagttcatctctaagtaacaaaaacccatcaa |
6172714 |
T |
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| Q |
198 |
ctttcgctccattagtcaaggcatctgcaatttgagactcagttggacaatgcat |
252 |
Q |
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| T |
6172713 |
cattcactccattagtcaaggcatctgcaattggagactcagttggacaatgcat |
6172659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 308 - 422
Target Start/End: Complemental strand, 6172652 - 6172543
Alignment:
| Q |
308 |
atgtgtttgcttctgccatttaacaatgggttcttcgctagatttattgctgacttgttaccaattagaagtttgattgatttcttcacttcaaccatta |
407 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
6172652 |
atgtgtttgcttctgccatgtaacaatgggttcttcgctagatttattgctgacttgttatcaattagcagtttgattga-----tcacttcaaccatta |
6172558 |
T |
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| Q |
408 |
gctccttaagcacaa |
422 |
Q |
| |
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| T |
6172557 |
gctccttaagcacaa |
6172543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 6172877 - 6172825
Alignment:
| Q |
14 |
acaatggtatttttagacttgtaacacaagtaaaatagttacacaactaacta |
66 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
6172877 |
acaatggtatttttagacttgcaacacaagtaaaatagttacacagctaacta |
6172825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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