View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_low_11 (Length: 507)

Name: NF7636_low_11
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_low_11
NF7636_low_11
[»] chr1 (8 HSPs)
chr1 (1-507)||(51807542-51808035)
chr1 (312-500)||(51803887-51804075)
chr1 (1-204)||(51779839-51780046)
chr1 (1-217)||(51771966-51772170)
chr1 (341-460)||(51772294-51772413)
chr1 (341-460)||(51780160-51780279)
chr1 (145-205)||(51803793-51803853)
chr1 (339-442)||(51761302-51761406)
[»] scaffold0710 (2 HSPs)
scaffold0710 (1-204)||(6481-6688)
scaffold0710 (341-460)||(6802-6921)


Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 51807542 - 51808035
Alignment:
Q  1 tcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgct 100  Q
    |||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||    
T  51807542 tcaaagcaaaagtaagactttcttttccttgac---agatgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacata----gagtgct 51807634  T
Q  101 ttattgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807635 ttattgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaa 51807734  T
Q  201 gacttagatgtgtttcctagatatatggtataatatacgaaaaccattttccatttctgtgtagtatctatatcagcttaactcctcttgcagttgctag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      |||||||    
T  51807735 gacttagatgtgtttcctagatatatggtataatatacgaaaaccattttccatttctgtgtagtatctatatcagctttactcctc------ttgctag 51807828  T
Q  301 ttgagttgcgcgtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttag 400  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51807829 ttgagttgcgcatatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttag 51807928  T
Q  401 gggctcaaattcttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatct 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  51807929 gggctcaaattcttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcacagtgttatct 51808028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 312 - 500
Target Start/End: Original strand, 51803887 - 51804075
Alignment:
Q  312 gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt 411  Q
    |||||||||||| |||  |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  51803887 gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt 51803986  T
Q  412 cttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatct 500  Q
    |||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  51803987 cttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcgcagtgttatct 51804075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 51779839 - 51780046
Alignment:
Q  1 tcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||  |||||||||    ||||||||||||    
T  51779839 tcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaacatctaatttcgctaggtattgaatgttttacca----atatagagtgct 51779934  T
Q  101 ttattgtttcaggtttaacaaattcgaacaagaaaagactt----gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtac 192  Q
    ||||||||||||||||||||||||| ||||||||||| |||    |||||||||||||||||||||||||||| |||||||||||| |    ||||||||    
T  51779935 ttattgtttcaggtttaacaaattcaaacaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtac 51780034  T
Q  193 ccttgtaagact 204  Q
    ||||||||||||    
T  51780035 ccttgtaagact 51780046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 51771966 - 51772170
Alignment:
Q  1 tcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgct 100  Q
    |||||||||||||||||||||| ||||||| ||   |||||||||||||| ||| |  |       |||||||||||||||||||    |||||||||||    
T  51771966 tcaaagcaaaagtaagactttcatttcctttac---agacgaatcatgaaaatcgatct-------gtattgatggttttaccaa----tatagagtgct 51772051  T
Q  101 tt--attgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgt 198  Q
    ||  ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  51772052 ttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagtacccttgt 51772151  T
Q  199 aagacttagatgtgtttcc 217  Q
    |||||| ||||||||||||    
T  51772152 aagactgagatgtgtttcc 51772170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 341 - 460
Target Start/End: Original strand, 51772294 - 51772413
Alignment:
Q  341 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 440  Q
    |||||||||| ||| || |||||||||| ||| ||||||| ||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51772294 aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt 51772393  T
Q  441 tacgcaatattttagtgtga 460  Q
    || ||  |||||||||||||    
T  51772394 tatgcggtattttagtgtga 51772413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 460
Target Start/End: Original strand, 51780160 - 51780279
Alignment:
Q  341 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 440  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| |||||||| || ||||||||||||| ||| | ||    
T  51780160 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt 51780259  T
Q  441 tacgcaatattttagtgtga 460  Q
    || ||| |||||||||||||    
T  51780260 tatgcactattttagtgtga 51780279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 51803793 - 51803853
Alignment:
Q  145 aggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagactt 205  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  51803793 aggaaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagactt 51803853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 442
Target Start/End: Original strand, 51761302 - 51761406
Alignment:
Q  339 aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagctta-ggggctcaaattcttcaaatgggtggagtggagaaagt 437  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||||  || ||   | ||||||| ||||||| || |||||| |||||||||| |    
T  51761302 aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaat 51761401  T
Q  438 gttta 442  Q
    |||||    
T  51761402 gttta 51761406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 6481 - 6688
Alignment:
Q  1 tcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||    ||||||||||||    
T  6481 tcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaatatcaaatttcgctaggtattgaatgttttacca----atatagagtgct 6576  T
Q  101 ttattgtttcaggtttaacaaattcgaacaagaaaagactt----gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtac 192  Q
    ||||||||||||||||||||||||| ||||||||||| |||    |||||||||||||||||||||||||||| |||||||||||| |    ||||||||    
T  6577 ttattgtttcaggtttaacaaattcaaacaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtac 6676  T
Q  193 ccttgtaagact 204  Q
    ||||||||||||    
T  6677 ccttgtaagact 6688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 460
Target Start/End: Original strand, 6802 - 6921
Alignment:
Q  341 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt 440  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| |||||||| || ||||||||||||| ||| | ||    
T  6802 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt 6901  T
Q  441 tacgcaatattttagtgtga 460  Q
    || ||| |||||||||||||    
T  6902 tatgcactattttagtgtga 6921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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