View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_17 (Length: 461)
Name: NF7636_low_17
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 45540974 - 45541307
Alignment:
| Q |
19 |
atcgtgtgtagaataaagtcattcaagtgaaggcatctttttatatagaggttgttccaaaataagtttcatataaaggatgatcttgcacatgttaaag |
118 |
Q |
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| T |
45540974 |
atcgtgtgtagaataaagtcatttaagtgaaggcatctttttatatagaggttgttctaaaataagtttcatataaaggatgatcttgcacatgttaaag |
45541073 |
T |
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| Q |
119 |
aaacttctttgttttacattgtgttggtggatg--gtgtacttgagaagtacacttatttgtagagtattcaatttttggattacaagatgttagtattg |
216 |
Q |
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| T |
45541074 |
aaacttctttgttttacattgtgttggtggatgcagtgtacttgagaagtacacttattcgcagagtattcaatttttggattacaagatgttagtattg |
45541173 |
T |
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| Q |
217 |
tcatggcaaacacatcttatattttgtgttgtttttattaacannnnnnnncttcagtttattaactaattaattaatcaattaataaactttgtttttt |
316 |
Q |
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| T |
45541174 |
tcatggcaaacacatcttatattttgtgttgtttttattaatattttttttcttcagtttattaactaattaattaatcaattaataaactttgtttttc |
45541273 |
T |
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| Q |
317 |
ataagatggagtaattatcttgcgatacccaact |
350 |
Q |
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| T |
45541274 |
ataagatggagtaattatcttgcgatacccaact |
45541307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 347 - 453
Target Start/End: Original strand, 45541329 - 45541435
Alignment:
| Q |
347 |
aactctataaataaaataagaaaaatgattattgttacaagataagtttgacnnnnnnntacaaatcatttgtatcagaatcaaagtacaaataataacc |
446 |
Q |
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| T |
45541329 |
aactctataaataaaataagaaaaatgattattgttacaagataagtttgataaaaaaatacaaatcattcgtatcagaatcaaagtataaataataacc |
45541428 |
T |
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| Q |
447 |
attcatt |
453 |
Q |
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| T |
45541429 |
attcatt |
45541435 |
T |
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