View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7636_low_2 (Length: 685)
Name: NF7636_low_2
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_2 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 154 - 674
Target Start/End: Complemental strand, 4517 - 3998
Alignment:
| Q |
154 |
atggcattatcataggagaataacagtgatggatagttgaaacactataggaatcaagtgctcatacaaaatacattcatatgttgcatatttataggtg |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4517 |
atggcattatcataggagaataacagtgatggatagttggaacactataggaatcaagtgctcatacaaaatacattcatatgttgcatatttataggtg |
4418 |
T |
|
| Q |
254 |
ttggaagataattttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatgat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4417 |
ttggaagataattttagaaatatatgtttccaagattttcaagacatatgtacatttgatcattatgataactatttatttctatcaatcgtataatgat |
4318 |
T |
|
| Q |
354 |
taattaagtgttttttccccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaaa |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4317 |
taattaagtgttttttccccataaaatattgcatatagtcaatcataagaacttaaaataataaaaccataaatatgaagtggaaatagtttagctaaaa |
4218 |
T |
|
| Q |
454 |
gtaatagaacagaaatgttgcatctcaacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataa |
553 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4217 |
gtaatagaacagaaatgttgcatctcaacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataa |
4118 |
T |
|
| Q |
554 |
acttctggaaattattgtatgatgatcccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttcc |
653 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4117 |
acttctggaaattattgtatgatgat-ccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttcc |
4019 |
T |
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| Q |
654 |
atcatttccatcacaggttct |
674 |
Q |
| |
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||||||||||||||| ||||| |
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| T |
4018 |
atcatttccatcacaagttct |
3998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 664
Target Start/End: Complemental strand, 3687 - 3619
Alignment:
| Q |
597 |
agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccat |
664 |
Q |
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||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||| || |||||||||||| |
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| T |
3687 |
agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttccat |
3619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 19 - 158
Target Start/End: Original strand, 35777022 - 35777162
Alignment:
| Q |
19 |
attccccctctttattttatatgttaatcacttttgtgtgtcattggatgaaacttgtataataacatcgggttattttgatattagaatgt-aattgtc |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35777022 |
attccccctctttattttatatgttaatcgcttttgtgtgtcattggatgaaacttgtataataacatcgggttattttgatattagaatgtaaattgtc |
35777121 |
T |
|
| Q |
118 |
gattccatcaatggaaaaggagaaagagacactatcatggc |
158 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35777122 |
gattccatcaatggaaaaggagaaagagacactatcatggc |
35777162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 371 - 660
Target Start/End: Original strand, 35774168 - 35774468
Alignment:
| Q |
371 |
cccataaaatattgcatatagtcaatcataagaacttacaataataaaaccataaatatgaagtggaaatagtttagctaaaagtaatagaacagaaatg |
470 |
Q |
| |
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|||| |||||||||| |||||| ||| |||||||| ||| |||||| ||| || | |||||||||||||||||||||||||||||||||||||||| |
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| T |
35774168 |
cccagaaaatattgcttatagttaatattaagaactaacattaataagacctta----ttaagtggaaatagtttagctaaaagtaatagaacagaaatg |
35774263 |
T |
|
| Q |
471 |
ttg------catctcaacaaaatacatagaccata--ctaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctgga |
562 |
Q |
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| | ||||||||||||||| |||||||||| ||| |||||||||||| | |||||||||||||| || || |||||||||||| |||||||||| |
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| T |
35774264 |
tcgatgtcgcatctcaacaaaatatatagaccatatactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctgga |
35774363 |
T |
|
| Q |
563 |
aattattgtatgatgatcccctcaaattag------ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccat |
655 |
Q |
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||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| | |||||||||||||||| |
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| T |
35774364 |
aattattgtatgatgatccacccaaattagtagcttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccat |
35774463 |
T |
|
| Q |
656 |
cattt |
660 |
Q |
| |
|
||||| |
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|
| T |
35774464 |
cattt |
35774468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 35848122 - 35848262
Alignment:
| Q |
540 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
632 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
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| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
35848221 |
T |
|
| Q |
633 |
tcttcttccttttctccttccatcatttccatcacaggttc |
673 |
Q |
| |
|
|||| | | ||||||||||||||||||||||||||| |||| |
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| T |
35848222 |
tcttttcctttttctccttccatcatttccatcacaagttc |
35848262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 674
Target Start/End: Original strand, 35865814 - 35865934
Alignment:
| Q |
561 |
gaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttcc |
653 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| ||||| | | |||||||||||| |
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| T |
35865814 |
gaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatttcttttcctttttctccttcc |
35865913 |
T |
|
| Q |
654 |
atcatttccatcacaggttct |
674 |
Q |
| |
|
||||||||||||||| ||||| |
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| T |
35865914 |
atcatttccatcacaagttct |
35865934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 35773870 - 35773933
Alignment:
| Q |
82 |
aacatcgggttattttg-atattagaatgtaattgtcgattccatcaatggaaaaggagaaaga |
144 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
35773870 |
aacatctggttattttttatattagattgtaattgtcgattccatcgatgcaaaaggagaaaga |
35773933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 141 - 1
Alignment:
| Q |
540 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
632 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
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|
| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
42 |
T |
|
| Q |
633 |
tcttcttccttttctccttccatcatttccatcacaggttc |
673 |
Q |
| |
|
|||| | | ||||||||||||||||||||||||||| |||| |
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|
| T |
41 |
tcttttcctttttctccttccatcatttccatcacaagttc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 596 - 668
Target Start/End: Complemental strand, 551 - 478
Alignment:
| Q |
596 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcaca |
668 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||| |
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|
| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcaca |
478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 596 - 668
Target Start/End: Complemental strand, 551 - 478
Alignment:
| Q |
596 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcaca |
668 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||| |
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|
| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcaca |
478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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