View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_20 (Length: 449)
Name: NF7636_low_20
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 6033866 - 6033974
Alignment:
| Q |
90 |
gattttaaagacttcttacaattcttatgaccatccgccatatgtgcaagagttt-gaagggttcttaggattaaaattttgacttgttaatttttcatt |
188 |
Q |
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| T |
6033866 |
gattttaaagacttcttacaattctgatgaccatcggccatatgtgcaagagttttgaagggttcttaggattaaaattttgacttgttaatttttcatt |
6033965 |
T |
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| Q |
189 |
gatttttgc |
197 |
Q |
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| T |
6033966 |
gatttttgc |
6033974 |
T |
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Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 248 - 350
Target Start/End: Original strand, 6034062 - 6034165
Alignment:
| Q |
248 |
tcccaacacatggtcattccaagtgtacta-atttattttatcatttgaacgaagtaaaatttcctgttaaaaaataattaaagaagggccagattcatt |
346 |
Q |
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| T |
6034062 |
tcccaacacatggtgattctaattgtactatatttattttatcatttgaatgaagtaaaattccctgttaaaaattaattaaagaacggccagattcgtt |
6034161 |
T |
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| Q |
347 |
agat |
350 |
Q |
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|||| |
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| T |
6034162 |
agat |
6034165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 6033804 - 6033858
Alignment:
| Q |
19 |
tggtcacgtcaaagatcacttataatcgatatgtgcgaacaccagacacattttaa |
74 |
Q |
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| T |
6033804 |
tggtcacgttaaagatcacttatagtcaatatatgcgaacaccag-cacattttaa |
6033858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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