View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_21 (Length: 435)
Name: NF7636_low_21
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Complemental strand, 11162903 - 11162504
Alignment:
| Q |
21 |
tgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttgattcaag |
120 |
Q |
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| T |
11162903 |
tgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttaattcaag |
11162804 |
T |
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| Q |
121 |
caacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatatt |
220 |
Q |
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| T |
11162803 |
caacaaagacgaagtttccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatatt |
11162704 |
T |
|
| Q |
221 |
gttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaaagattatggagttt |
320 |
Q |
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| T |
11162703 |
gttttgattggtgaagatgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaaagattatggagttt |
11162604 |
T |
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| Q |
321 |
cggttgtgttgctgatgtccaagtccgttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatctgctatacttttgat |
420 |
Q |
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| T |
11162603 |
cggttgtgttgctgatgtccaagtcagttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatctgctatacttttgat |
11162504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 138 - 420
Target Start/End: Complemental strand, 11201561 - 11201279
Alignment:
| Q |
138 |
ccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaaga |
237 |
Q |
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| T |
11201561 |
ccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaaga |
11201462 |
T |
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| Q |
238 |
tgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaaagattatggagtttcggttgtgttgctgatg |
337 |
Q |
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| T |
11201461 |
tgcatctgttacaaaagagcctaagctggtgcatgttaaggttgaagcctatgagtgaagtctcttgaaagattatggagtttcggttgtgttgctgatg |
11201362 |
T |
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| Q |
338 |
tccaagtccgttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatctgctatacttttgat |
420 |
Q |
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| T |
11201361 |
tccaagtcagttgtccttttgtttccgttaatgactgtttcggttatggttttgtgttttgaaagatctgctatacttttgat |
11201279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 11162956 - 11162813
Alignment:
| Q |
124 |
caaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgtt |
223 |
Q |
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|||| |||||||||| || |||||| | |||||||| ||||| |||| ||||||||||| | ||| |||||||||| |||||||| |||||| ||||| |
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| T |
11162956 |
caaaaacgaagttgcagcggctgattcggctgtgactcaaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgattttgtt |
11162857 |
T |
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| Q |
224 |
ttgattggtgaagatgcatctgttacaaaagagcctaagctggt |
267 |
Q |
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| T |
11162856 |
gtgcttagttctgatgcatctgctacaaaagagccaaagctggt |
11162813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 11201522 - 11201432
Alignment:
| Q |
21 |
tgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggt |
111 |
Q |
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| T |
11201522 |
tgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatctgttacaaaagagcctaagctggt |
11201432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 4802856 - 4802779
Alignment:
| Q |
108 |
tggttgattcaagcaacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagc |
185 |
Q |
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| T |
4802856 |
tggttgattcaagcaacaaagacgaagttgctgctactgattcaattgtgactccaactagtaaacctttgggaaagc |
4802779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 4802779 - 4802699
Alignment:
| Q |
117 |
caagcaacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgata |
197 |
Q |
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|||||||||||||||||||||| || | ||||||| ||||||||||||||| |||| ||||||||||||| ||| |||||| |
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| T |
4802779 |
caagcaacaaagacgaagttgctgctactgattcaattgtgactccaactagcaaacctttgggaaagcggtctactgata |
4802699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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