View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_25 (Length: 425)
Name: NF7636_low_25
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 33352437 - 33352680
Alignment:
| Q |
20 |
cgtgctagactttctacaaggatat--catagtgatgtctttggggtatattgccacgcttcattgcacagcaaggatgaactgtgacacagagactagt |
117 |
Q |
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| T |
33352437 |
cgtgctagactttctacaaggatatatcatagtgatgtctttggggtatattgccacgcttcattgcacagcaaggatgaactgtgacac--agactagt |
33352534 |
T |
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| Q |
118 |
aggcatcgcacaacaacaatttcggaaaagtagggttttgcatatctataattaaagactaaagaggacttcaaataaattgagcacacatatttcttgt |
217 |
Q |
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| T |
33352535 |
aggcatcgcacaacaacaatttcggaaaagtagggttttgcatatcta-----------taaagaggccttaaaataaattgagcacacatatttcttgt |
33352623 |
T |
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| Q |
218 |
tacattatttttccaaagaataattttaccatagtcaatctttttcgagagtatcaa |
274 |
Q |
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| T |
33352624 |
tacattatttttccaaagaataattttaccatagttaatctttttcgagagtatcaa |
33352680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 33352728 - 33352777
Alignment:
| Q |
312 |
atcaattgagtgttcatgatttccaattatactttgaattgaagaaaatg |
361 |
Q |
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| T |
33352728 |
atcaattgagtgttgatgatttccaattatacttcgaattgaagaaaatg |
33352777 |
T |
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