View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_27 (Length: 416)
Name: NF7636_low_27
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 35771372 - 35771769
Alignment:
| Q |
1 |
ctgaagatgattgatctacacaattgtgacaatcttctaggttttggggacaatattgaaaactatatagaaattggatctcttaatactctggtccttt |
100 |
Q |
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| T |
35771372 |
ctgaagatgattgatctacacaattgtgacaatcttctaggttttggggacaatattgaaaactatatagaaattggatctcttaatactctggtccttt |
35771471 |
T |
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| Q |
101 |
ctgggtgcaaacaactcaatgcatcaaatctctatttcaacatcaaagcatggcaatcaactttaacctcgctgaatttggaaaactgttgcaacttaga |
200 |
Q |
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| T |
35771472 |
ctgggtgcaaacaactcaatgcatcaaatctctatttcaacatcaaagcatggcaatcaactttaacctcgctgaatttggaaaactgttgcaacttaaa |
35771571 |
T |
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| Q |
201 |
ggcactacctgacaacattggtttattatcatcgttgcaacgcttaaggctaagtggaagcaatgttgagagtttgataccaaacataaaaaatctcaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35771572 |
ggcactacctgacaacattggtttattatcatcgttgcaacgcttaaggctaagtggaagcaatgttgagagtttgacaccaaacataaaaaatctcaac |
35771671 |
T |
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| Q |
301 |
aacctcaaagaactaaggttagactactgcaagaaactcgtgtccgtatctgtgtctgactttccaccgtcactgcgattgtttagtgctattaactg |
398 |
Q |
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| T |
35771672 |
aacctcaaagaactaaggttagactactgcaagaaactcgtgtccgtatctgtgtctgactttccaccgtcactgcgattgtttagtgctattaactg |
35771769 |
T |
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