View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_low_32 (Length: 397)

Name: NF7636_low_32
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_low_32
NF7636_low_32
[»] chr1 (1 HSPs)
chr1 (2-397)||(1057527-1057923)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 2 - 397
Target Start/End: Original strand, 1057527 - 1057923
Alignment:
Q  2 catgagcttttaccggccggttatatgtcattaat-gttcacagcatgttggannnnnnnnnnnnnnngtgactaaagcatgttggtttatatgggcaag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |               ||||||||||||||||||||||||||||||||    
T  1057527 catgagcttttaccggccggttatatgtcattaattgttcacagcatgttgaattttttttattttttgtgactaaagcatgttggtttatatgggcaag 1057626  T
Q  101 aactatggttaaaaatgaaaaacttgacaaaatctttactatctcaagaataaaataaacaactcaattcgctaggtgtctttcttggaaattacagctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1057627 aactatggttaaaaatgaaaaacttgacaaaatctttactatctcaagaataaaataaacaactcaattcgctaggtgtctttcttggaaattacagctg 1057726  T
Q  201 tacgactcaacttgaaggtaaagacccacatttggtgaaaacttcacaaacacacttgaccttgttttcttccatgactttgtacttaaatataaattct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1057727 tacgactcaacttgaaggtaaagacccacatttggtgaaaacttcacaaacacacttgaccttgttttcttccatgactttgtacttaaatataaattct 1057826  T
Q  301 tcaacatataatgcatggtgattactaactagaaagatctatctcctctatacttcaactcaattgcagttaccctcaagtttagtgtttcttgcaa 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1057827 tcaacatataatgcatggtgattactaactagaaagatctatctcctctatacttcaactcaattgcagttaccctcaagtttagtgtttcttgcaa 1057923  T

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