View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_33 (Length: 396)
Name: NF7636_low_33
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_33 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Original strand, 28901115 - 28901504
Alignment:
| Q |
7 |
tcgaagaatatcaacaaactttgaaaccagtaacagataatcacattcacatcagaaacccagctatgctctaacgcaggaaataatacagtatagtcaa |
106 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28901115 |
tcgaataacatcaacaaactttgaaaccagtaacagataatcacattcacatcagaaacccagctatgctctaacgcaggaaataatacagtatagtcaa |
28901214 |
T |
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| Q |
107 |
catctaatagaaaaatggtttagaaaatgagtttcattttaacttggaaaatactactttgattgcaaccaggtttcagaattgggggatagtgcagcag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28901215 |
catctaatagaaaaatggtttagaaaatgagtttcattttaacttggaaaatactactttgattgcaaccaggtttcagaattgggggatagtgcagcag |
28901314 |
T |
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| Q |
207 |
aaaatattattagcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacataagaaagccggagcagaatt |
306 |
Q |
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| T |
28901315 |
aaaatattgttagcaaattaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacataagaaagccggagcagaatt |
28901414 |
T |
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| Q |
307 |
tcttggttgatgccagcttgctttgatgatctgttgattcctgtgatatggatacatatatcaatgtatgtaaataagaaaattatgatt |
396 |
Q |
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| T |
28901415 |
tcttggttgatgtcagcttgctttgatgatcttttgattcctgtgatatggatacatatatcaatgtatgtatataagaaaattatgatt |
28901504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 28924752 - 28925131
Alignment:
| Q |
16 |
atcaacaaactttgaaaccagtaacagataatcacattcacatcagaaacccagctatgctctaacgcaggaaataatacagtatagtcaacatctaata |
115 |
Q |
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||||||||| ||||||| || ||||| ||||| || | ||| ||||||||||||||||||||| || |||||||||||| |||||| ||||||||||||| |
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| T |
28924752 |
atcaacaaattttgaaatcaataacaaataatgacctccacgtcagaaacccagctatgctcttactcaggaaataatatagtatattcaacatctaata |
28924851 |
T |
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| Q |
116 |
gaaaaatggtttagaaaatgagtttcattttaacttggaaaatactactttgattgcaaccaggtttcagaattgggggatagtgcagcagaaaatatta |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |
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| T |
28924852 |
gaaaaatggtttagaaaattagtttcattttaacttggaaaatactactttgattgcaaccaggattcagaattgggggatattgcatcagaaaatattg |
28924951 |
T |
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| Q |
216 |
ttagcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacataagaaagccggagcagaatttcttggttg |
315 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
28924952 |
ttggcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacattagaaagccggagcagaatttcttggctg |
28925051 |
T |
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| Q |
316 |
atgccagcttgctttgatgatctgttgattcctgtgatatggatacatatatcaatgtatgtaaataagaaaattatgat |
395 |
Q |
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| T |
28925052 |
atgtcatcttgctttgatgatctgttgattcctgtgatacagatacatatatcaatgtatgcatataagaaaagtatgat |
28925131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 28915554 - 28915906
Alignment:
| Q |
16 |
atcaacaaactttgaaaccagtaacagataatcacattcacatcagaaacccagctatgctctaacgcaggaaataatacagtatagtcaacatctaata |
115 |
Q |
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||||||||||| ||||| || ||||| |||||||| ||||||||||||||||||||||| ||| |||| |||||||||||| |||| | |||| | ||| |
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| T |
28915554 |
atcaacaaactatgaaatcaataacaaataatcaccttcacatcagaaacccagctatggtcttacgccggaaataatacaatatattaaacaaattata |
28915653 |
T |
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| Q |
116 |
gaaaaatggtttagaaaatgagtttc-attttaacttggaaaatactactttgattgcaaccaggtttcagaattgggggatagtgcagcagaaaatatt |
214 |
Q |
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| T |
28915654 |
gaaaaatggttttggaaatgagtttccattttaacttggaaaccactactttgattgaaaccaggtttcagaattgtgggacattgcagcagaaaatatt |
28915753 |
T |
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| Q |
215 |
attagcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacataagaaagccggagcagaatttcttggtt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
28915754 |
gttagcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgatagatacatctttgggcacattagaaagccggagcagaatttcttggtt |
28915853 |
T |
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| Q |
315 |
gatgccagcttgctttgatgatctgttgattcctgtgatatggatacatatat |
367 |
Q |
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| T |
28915854 |
gatttcgtcttggtttgatgatcttcttattcctgtgatatggatacgtatat |
28915906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 388
Target Start/End: Original strand, 28890626 - 28891005
Alignment:
| Q |
16 |
atcaacaaactttgaaaccagtaacagataatcacattcacatcagaaacccagctatgctctaacgcaggaaataatacagtatagtcaacatctaata |
115 |
Q |
| |
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|||||||||||||||| || ||||| |||| ||| |||| | ||||||||| |||||||||| || || |||||||||||||||| ||||||||| ||| |
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| T |
28890626 |
atcaacaaactttgaagtcaataacaaataaccaccttcatagcagaaacccggctatgctcttactcaagaaataatacagtatattcaacatcttata |
28890725 |
T |
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| Q |
116 |
gaaaaatggtttagaaaatgagtttc-attttaacttggaaaatactactttgattgcaaccaggtttcagaattgggggatagtgcagcagaaaata-- |
212 |
Q |
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| T |
28890726 |
gaaaaatggtttagaaaatgagtttccacttttacttgaaacag-ctactctgtttgcaaccaggtttcaaaaattgggtaaattgcagtagaaaatact |
28890824 |
T |
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| Q |
213 |
-tta----ttagcaaagtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacataagaaagccggagcagaattt |
307 |
Q |
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||| |||||| | || ||||||||||||||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||| |||||| |
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| T |
28890825 |
gttagtagttagcacaatattaatacctcagaaaagtcatcatcagaaattttgctgataggtacatcttctgccacataagaaagccggagctgaattt |
28890924 |
T |
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| Q |
308 |
cttggttgatgccagcttgctttgatgatctgttgattcctgtgatatggatacatatatcaatgtatgtaaataagaaaa |
388 |
Q |
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|||||| ||| | | | |||||||||||| |||||||||||||||||||||| |||| ||||||||| | ||||||||| |
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| T |
28890925 |
cttggtagatttcctccttctttgatgatcttttgattcctgtgatatggatacgtataacaatgtatgcatataagaaaa |
28891005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 28933693 - 28934064
Alignment:
| Q |
16 |
atcaacaaactttgaaaccagtaacagataatcacattcacatcagaaacccagctatgctct-aacgcaggaaataatacagtatagtcaacatctaat |
114 |
Q |
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||||||||||||||||| || || || |||| ||| ||||||||||||||||||||||||||| || |||||||| | ||||| |||||||| || |
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| T |
28933693 |
atcaacaaactttgaaatcaatatcaaataaccaccttcacatcagaaacccagctatgctcttaatgcaggaaaga-----gtatatccaacatcttat |
28933787 |
T |
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| Q |
115 |
agaaaaatggtttagaaaatgagtttc-attttaacttggaaaatactactttgattgcaaccaggtttcagaattgggggatagtgcagcagaaaatat |
213 |
Q |
| |
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||||| |||||||||||||| |||||| | ||| ||||||||| ||||| ||||||||||||||||||| || ||| | ||| ||| |||||||||| |
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| T |
28933788 |
agaaatatggtttagaaaataagtttccacttttacttggaaactacta---tgattgcaaccaggtttcataaatggagaatattgcggcagaaaatac |
28933884 |
T |
|
| Q |
214 |
tattagcaa-------agtaataatacctcagaaaagtcaacatcagaaatttggctgataggtacatcttttggcacataagaaagccggagcagaatt |
306 |
Q |
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| T |
28933885 |
tgttagcagttatcacagtattaatacctcagaaaagtcatcgtcagatattttgctgataggtacatcttttggcacattagagagctggagcagaatt |
28933984 |
T |
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| Q |
307 |
tcttggttgatgccagcttgctttgatgatctgttgattcctgtgatatggatacatatatcaatgtatgtaaataagaaaattatgat |
395 |
Q |
| |
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||||||||| | ||| ||| |||||||| |||||||||||||||||||||||||||||||||| | ||||||||| |||||| |
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| T |
28933985 |
tcttggttggt-----tttg--ttg--gatctgttaattcctgtgatatggatacatatatcaatgtatgcatataagaaaagtatgat |
28934064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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