View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_34 (Length: 395)
Name: NF7636_low_34
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 23 - 387
Target Start/End: Complemental strand, 44475756 - 44475392
Alignment:
| Q |
23 |
gtaatatatactctcgagtccctgtcacattctttcttcctatttaattattcatatttattatgttttatctatctctaatcatcctgaataagttgaa |
122 |
Q |
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| T |
44475756 |
gtaatatatactctcgagtccctgtcacattctttcttcctatttaattattcatatttattatgttttatctatctctaatcatcctgaataagttgaa |
44475657 |
T |
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| Q |
123 |
actaataatcatactaatctgatttgggaatcaagcagtcaaaccgtctgctcacattttttaaaacacttgaagcccatcaactctataaaatagttga |
222 |
Q |
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| T |
44475656 |
actaataatcatactaatctgatttgggaatcaggcagtcaaaccgtctgcgcacattttttaaaacacttgaagcccatcaactctataaaatagttga |
44475557 |
T |
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| Q |
223 |
aacaaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatactttttataaagattaaataatttacctgatgccaagttaagtt |
322 |
Q |
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| T |
44475556 |
aacaaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatactttttataaagattaaataatttacctgatgccaagttaagtt |
44475457 |
T |
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| Q |
323 |
gcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctctgct |
387 |
Q |
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| T |
44475456 |
gcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctctgct |
44475392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 384
Target Start/End: Complemental strand, 39849370 - 39849205
Alignment:
| Q |
217 |
agttgaaacaaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatacttt-----ttataaagattaaataatttacctgatgc |
311 |
Q |
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| T |
39849370 |
agttgaaagaaaggtgataata--gtggtaaccacgaatactatatcaaattttccataatactttaattttttaaaagatcaaataatttacctgatgc |
39849273 |
T |
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| Q |
312 |
caagttaagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatatacacgatctct |
384 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||| |
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| T |
39849272 |
caagtt-----gcagattaagattcatataatagctttgatggtcttcaaaattgcccatatgcacgaactct |
39849205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 384
Target Start/End: Complemental strand, 38633586 - 38633481
Alignment:
| Q |
274 |
taatactttttataaagattaaataatttacctgatgccaagttaagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatat |
373 |
Q |
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| T |
38633586 |
taatactttttttaaagatcaagtaatttacctgttgccaagtt-----gcagattaagattcagatactagctttgatggtcttcaaaaaggcccatat |
38633492 |
T |
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| Q |
374 |
acacgatctct |
384 |
Q |
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| T |
38633491 |
acacgatctct |
38633481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 38452708 - 38452792
Alignment:
| Q |
36 |
tcgagtccctgtcacattctttcttcctatttaattattcatatttattatgttttatctatctctaatcatcctgaataagttgaaa |
123 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
38452708 |
tcgagtccctatcacgttctttcttcctatttaattattcatat---ttctgttttatctatctctaatcatcctgaataagttgaaa |
38452792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 39849903 - 39849863
Alignment:
| Q |
97 |
tctctaatcatcctgaataagttgaaactaataatcatact |
137 |
Q |
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| T |
39849903 |
tctctaatcatcttgaataagttgaaactaataatcatact |
39849863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 317
Target Start/End: Original strand, 38453204 - 38453297
Alignment:
| Q |
226 |
aaaggtgataatatagtggtaaccatgaatacaaaatcaaattttctataatacttt----ttataaagattaaataatttacctgatgccaagtt |
317 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||||||| |||||| ||| || ||| || |||||||||||||||||||||||| |
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| T |
38453204 |
aaaggtgataata--gtggtaaccatgaatactatatcaaattttccataatagttttttgttcaaaaaatcaaataatttacctgatgccaagtt |
38453297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 7045435 - 7045491
Alignment:
| Q |
318 |
aagttgcagattaagattcagataatagctttgatggtcttcaaaaaagcccatata |
374 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
7045435 |
aagttgcaaattaagattcagataatagctttgatggtcttctaaaatggccatata |
7045491 |
T |
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