View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_35 (Length: 394)
Name: NF7636_low_35
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 16172135 - 16172522
Alignment:
| Q |
7 |
tttggtgttcaaaaagagagaattcgaaaacattatagcatgaactgtaattttgtctaacttttgtgaacagattcaagggacgaaatacgatccagaa |
106 |
Q |
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| T |
16172135 |
tttgatgttcaaaaagagagaattctaaaacattatagcatgaactgtaattttgtctaacttttgtgaacagattcaagggacgaaatacgatccagaa |
16172234 |
T |
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| Q |
107 |
ggcgaatacattcgacaatggctaccagagttggcaagaattccaactgagtggatccatcatccatggaatgcaccacttactgtgctaagagcatcag |
206 |
Q |
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| T |
16172235 |
ggcgaatacattcgacaatggctaccagagttggcaagaattccaactgagtggatccatcatccatggaatgcaccacttactgtgctaaaagcatcag |
16172334 |
T |
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| Q |
207 |
gtatagagttaggtcaaaactatccaaaaccaatcattgaaatagatttggctagagaacaattgactcaagctatattcaagatgtgggaagatgaggc |
306 |
Q |
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| T |
16172335 |
gtatagagttaggtcaaaactatccaaaaccaatcattgaaatagatttggctagagaacaattgactcaagctatattcaagatgtgggaagatgaggc |
16172434 |
T |
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| Q |
307 |
agcttcaaaagcttctacctcagaaaataaacatgaagtagttgacgacagtgaaaatttgtcgattcccaacgttttattgcaggac |
394 |
Q |
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| T |
16172435 |
agcttcaaaagcttctacctcagaaaataaacatgaagtagttgacgacagtgaaaatttgtcgattccaaaagttttcttgaaggac |
16172522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 122 - 322
Target Start/End: Original strand, 33759913 - 33760113
Alignment:
| Q |
122 |
caatggctaccagagttggcaagaattccaactgagtggatccatcatccatggaatgcaccacttactgtgctaagagcatcaggtatagagttaggtc |
221 |
Q |
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| T |
33759913 |
caatggctacctgagttggcgagaatgccaactgagtggatccatcatccttggaatgcaccacttagtgtgcttagagcatcaggagtcgagttaggtc |
33760012 |
T |
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| Q |
222 |
aaaactatccaaaaccaatcattgaaatagatttggctagagaacaattgactcaagctatattcaagatgtgggaagatgaggcagcttcaaaagcttc |
321 |
Q |
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| T |
33760013 |
aaaactatccgaatccaataattgatatagatatggccagagaaaatctgactcaagccatattcaagatgtgggaaattcaagcagcatcaaaagcttc |
33760112 |
T |
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| Q |
322 |
t |
322 |
Q |
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| T |
33760113 |
t |
33760113 |
T |
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