View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_low_38 (Length: 380)

Name: NF7636_low_38
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_low_38
NF7636_low_38
[»] chr4 (6 HSPs)
chr4 (187-298)||(45089074-45089185)
chr4 (56-117)||(44668643-44668704)
chr4 (56-117)||(44687919-44687980)
chr4 (56-114)||(45095421-45095479)
chr4 (293-345)||(45089269-45089321)
chr4 (62-117)||(45088966-45089021)
[»] chr1 (11 HSPs)
chr1 (64-260)||(43908263-43908463)
chr1 (49-112)||(44004750-44004813)
chr1 (296-346)||(43986437-43986487)
chr1 (61-112)||(43986170-43986221)
chr1 (294-340)||(19567623-19567669)
chr1 (294-343)||(43908129-43908178)
chr1 (56-117)||(43990947-43991008)
chr1 (195-246)||(23682248-23682299)
chr1 (50-109)||(43983350-43983409)
chr1 (50-112)||(43917824-43917886)
chr1 (294-343)||(23682100-23682149)
[»] chr2 (2 HSPs)
chr2 (63-170)||(24002293-24002400)
chr2 (294-336)||(24002056-24002098)
[»] chr8 (3 HSPs)
chr8 (294-336)||(24042033-24042075)
chr8 (294-339)||(42694119-42694164)
chr8 (50-111)||(42700084-42700145)
[»] chr5 (1 HSPs)
chr5 (50-110)||(8837771-8837831)
[»] chr7 (1 HSPs)
chr7 (56-117)||(41688786-41688847)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 45089074 - 45089185
Alignment:
Q  187 acattgtcaccatcttgttgaggcagcaacactttaccataagtctctttctcaacatcataggaaataatcacctcatgattagcagaattagaatcaa 286  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||  ||||||| |||||||||| |||    
T  45089074 acattgtgaccatcatgttgaggcagcaacacttcaccataagtctctttctcaacattaaaggaaataatcaccttttgattagtagaattagaaccaa 45089173  T
Q  287 caccatgtttat 298  Q
    |||||| |||||    
T  45089174 caccatttttat 45089185  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 44668643 - 44668704
Alignment:
Q  56 atgaacatcaatttagtccatgactcgacgactccttactctttcatcatccacacaaccca 117  Q
    |||| ||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  44668643 atgatcatcagtttagtccatgactcaacaactccatactctttcatcatccacacaaccca 44668704  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 44687919 - 44687980
Alignment:
Q  56 atgaacatcaatttagtccatgactcgacgactccttactctttcatcatccacacaaccca 117  Q
    |||| ||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  44687919 atgatcatcagtttagtccatgactcaacaactccatactctttcatcatccacacaaccca 44687980  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 45095421 - 45095479
Alignment:
Q  56 atgaacatcaatttagtccatgactcgacgactccttactctttcatcatccacacaac 114  Q
    |||| ||||| ||||||||||||||| || ||||| |||||||||||||||||||||||    
T  45095421 atgatcatcattttagtccatgactcaacaactccatactctttcatcatccacacaac 45095479  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 45089321 - 45089269
Alignment:
Q  293 gtttatacctttggtgaaaattcttggacagctgttcaaaatttcccgtgtga 345  Q
    |||||||| |||||||||||||||| |||| || |||||||||||||||||||    
T  45089321 gtttatacttttggtgaaaattcttagacaactattcaaaatttcccgtgtga 45089269  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 45088966 - 45089021
Alignment:
Q  62 atcaatttagtccatgactcgacgactccttactctttcatcatccacacaaccca 117  Q
    |||||||||| ||| ||||| |  ||||| ||||||||||||||||||||||||||    
T  45088966 atcaatttagcccacgactcaataactccatactctttcatcatccacacaaccca 45089021  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 260
Target Start/End: Complemental strand, 43908463 - 43908263
Alignment:
Q  64 caatttagtccatgactcgacgactccttactctttcatcatccacacaacccatactctttccttagtgtgatcaaaacacactaaaatgcatttactc 163  Q
    |||||||||||||||||   | ||||| ||||||||||||||||| |||| |||    ||||||||||  ||||||||||||||  ||| ||| ||||||    
T  43908463 caatttagtccatgacttagcaactccatactctttcatcatccatacaatccaatgactttccttagaatgatcaaaacacacagaaaggcagttactc 43908364  T
Q  164 aagacatacaaaacag-attgcggacattgt---caccatcttgttgaggcagcaacactttaccataagtctctttctcaacatcataggaaataatca 259  Q
    || |||| |||  ||| || ||| |||||||   || |||| |||||||| ||||||||||  || ||| | |||||||||| ||||  |||||||||||    
T  43908363 aacacattcaatccagaatagcgtacattgtgagcatcatcatgttgaggtagcaacacttccccgtaattttctttctcaagatcaatggaaataatca 43908264  T
Q  260 c 260  Q
    |    
T  43908263 c 43908263  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 44004750 - 44004813
Alignment:
Q  49 ctgaggtatgaacatcaatttagtccatgactcgacgactccttactctttcatcatccacaca 112  Q
    |||||| |||| |||||||||||||||||||||  | ||||| |||||||||||||||||||||    
T  44004750 ctgagggatgatcatcaatttagtccatgactcagcaactccatactctttcatcatccacaca 44004813  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 43986487 - 43986437
Alignment:
Q  296 tatacctttggtgaaaattcttggacagctgttcaaaatttcccgtgtgat 346  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||    
T  43986487 tatacctttggtgaaaattcttgcacaactgttccaaatttcccgtgtgat 43986437  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 43986170 - 43986221
Alignment:
Q  61 catcaatttagtccatgactcgacgactccttactctttcatcatccacaca 112  Q
    ||||||||||||||||||||| || ||||| |||||||||||| ||||||||    
T  43986170 catcaatttagtccatgactcaacaactccatactctttcatcctccacaca 43986221  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 19567669 - 19567623
Alignment:
Q  294 tttatacctttggtgaaaattcttggacagctgttcaaaatttcccg 340  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||    
T  19567669 tttatacctttggtgaaaattcttggacaacacttcaaaatttcccg 19567623  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 43908129 - 43908178
Alignment:
Q  294 tttatacctttggtgaaaattcttggacagctgttcaaaatttcccgtgt 343  Q
    ||||||||||||||||||||||||||| | || ||| |||||||||||||    
T  43908129 tttatacctttggtgaaaattcttggaaatctcttccaaatttcccgtgt 43908178  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 43990947 - 43991008
Alignment:
Q  56 atgaacatcaatttagtccatgactcgacgactccttactctttcatcatccacacaaccca 117  Q
    |||| ||||||||||||||||||||| |  |  || ||||||||||||||||||||||||||    
T  43990947 atgatcatcaatttagtccatgactcaataatgccatactctttcatcatccacacaaccca 43991008  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 23682299 - 23682248
Alignment:
Q  195 accatcttgttgaggcagcaacactttaccataagtctctttctcaacatca 246  Q
    |||||| |||||||| ||||||||||  ||||||||||||||||||| ||||    
T  23682299 accatcatgttgaggaagcaacacttcgccataagtctctttctcaagatca 23682248  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 43983350 - 43983409
Alignment:
Q  50 tgaggtatgaacatcaatttagtccatgactcgacgactccttactctttcatcatccac 109  Q
    ||||| |||| ||| ||||||||||||||||| || ||||| ||||||||||||| ||||    
T  43983350 tgagggatgatcatgaatttagtccatgactcaacaactccatactctttcatcaaccac 43983409  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 43917886 - 43917824
Alignment:
Q  50 tgaggtatgaacatcaatttagtccatgactcgacgactccttactctttcatcatccacaca 112  Q
    ||||| |||| ||| ||||||||||||||||| |  |||||  ||||||||||||||||||||    
T  43917886 tgagggatgatcatgaatttagtccatgactcaaaaactccacactctttcatcatccacaca 43917824  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 23682100 - 23682149
Alignment:
Q  294 tttatacctttggtgaaaattcttggacagctgttcaaaatttcccgtgt 343  Q
    ||||||| ||||||||||||||||||||| | |||  |||||||||||||    
T  23682100 tttatacttttggtgaaaattcttggacaacggtttcaaatttcccgtgt 23682149  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 24002400 - 24002293
Alignment:
Q  63 tcaatttagtccatgactcgacgactccttactctttcatcatccacacaacccatactctttccttagtgtgatcaaaacacactaaaatgcatttact 162  Q
    ||||||| ||||||||||| || ||||| |||| |||||||||||||||||||||     ||||||||| |||||| ||| ||||  ||||||| |||||    
T  24002400 tcaattttgtccatgactcaacaactccgtactttttcatcatccacacaacccaatgagtttccttagggtgatcgaaagacacacaaatgcaattact 24002301  T
Q  163 caagacat 170  Q
    ||| ||||    
T  24002300 caaaacat 24002293  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 24002056 - 24002098
Alignment:
Q  294 tttatacctttggtgaaaattcttggacagctgttcaaaattt 336  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  24002056 tttatacctttggtgaaaattcttggacaactgttcaaaattt 24002098  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 24042075 - 24042033
Alignment:
Q  294 tttatacctttggtgaaaattcttggacagctgttcaaaattt 336  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  24042075 tttatacctttggtgaaaattcttggacaacagttcaaaattt 24042033  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 42694119 - 42694164
Alignment:
Q  294 tttatacctttggtgaaaattcttggacagctgttcaaaatttccc 339  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||    
T  42694119 tttatacctttggtgaaaattcttggaaaactgttccaaatttccc 42694164  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 42700145 - 42700084
Alignment:
Q  50 tgaggtatgaacatcaatttagtccatgactcgacgactccttactctttcatcatccacac 111  Q
    ||||| ||||||||||||||||||||||||||  | ||||| || | |||||||||||||||    
T  42700145 tgaggaatgaacatcaatttagtccatgactcagcaactccatattgtttcatcatccacac 42700084  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 8837771 - 8837831
Alignment:
Q  50 tgaggtatgaacatcaatttagtccatgactcgacgactccttactctttcatcatccaca 110  Q
    ||||| ||| |||||||||| |||||||||||| | ||||| |||| ||||||||||||||    
T  8837771 tgagggatggacatcaattttgtccatgactcggcaactccatactttttcatcatccaca 8837831  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 41688786 - 41688847
Alignment:
Q  56 atgaacatcaatttagtccatgactcgacgactccttactctttcatcatccacacaaccca 117  Q
    |||| ||||||||||||||||||||| || ||||  ||||||||||||| |||  |||||||    
T  41688786 atgatcatcaatttagtccatgactcaacaactctatactctttcatcaaccatgcaaccca 41688847  T

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