View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7636_low_39 (Length: 378)
Name: NF7636_low_39
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_39 |
 | |
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| [»] scaffold1118 (1 HSPs) |
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| [»] scaffold1801 (1 HSPs) |
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| [»] scaffold0902 (3 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold1118 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 1904 - 2264
Alignment:
| Q |
17 |
aaaactaaactaattttctcatttctgagacaaacttattaacagagttt---------aattatagtttctcatcatttaaaattatgcttagggcaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
1904 |
aaaactaaactaattttctcatttctgagacaaacttattaacagagtttgagtatgccaattatagtttctcatcatttaaaattatgattagggcaaa |
2003 |
T |
|
| Q |
108 |
agcaaggacttgaagatattgatacacattctcattctttcaaatgtacaacataccataatcaccgtacttatatcgtactactactgaaattacacta |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2004 |
agcaaggacttgaagatattgataaacattctcattctttcaaatgtacaacataccataatcaccgtacttatatagtactactactgaaattacacta |
2103 |
T |
|
| Q |
208 |
actagaaattacaaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactct |
307 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
2104 |
actataaattacaaatacatttaaaattattcaccatatatagtaacaaaaccaaatcataacacaaattgtctaatcctaaacgaatcaaatgaactct |
2203 |
T |
|
| Q |
308 |
tttcaatttcgtggcaatggtttagagaaacccaaaatgcaaaaatactataaatttcatc |
368 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2204 |
tttcaatttcgtgacaatggtttagagaaacacaaaatgcaaaaatactataaatttcatc |
2264 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 67 - 357
Target Start/End: Complemental strand, 1088 - 774
Alignment:
| Q |
67 |
aattatagtttctcatcatttaaaattatgcttaggg-caaaagcaaggacttgaagatattgatacacattctcattctttcaaatgtacaacatacca |
165 |
Q |
| |
|
|||||||||||| |||||||||||||| || | |||| ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
1088 |
aattatagtttcccatcatttaaaattctgatcaggggcaaaagcaaggacttcaagatattgttacacattctcagtctttcaaatgtacaacatacca |
989 |
T |
|
| Q |
166 |
taatcaccgtact----tatatcgtactactactgaaattacactaactagaaattaca-------------------aatacatttaaaattattcacc |
242 |
Q |
| |
|
||||||| ||||| |||||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||||| | |
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|
| T |
988 |
taatcactgtacttgtgtatatcctactactactgaaattacactaactagaaatttcaaatacatatagtagtgaagaatacatttaaaatcattcatc |
889 |
T |
|
| Q |
243 |
atatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactcttttcaatttcgtggcaatggtttagagaaacccaa |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| || | ||| ||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
888 |
ttatatagtaacaaaaccaaaccataacacagatcgtctaatccgaatcaaatttaatgaactcttttcaatttcgtgacaatggtttagaaaaacccaa |
789 |
T |
|
| Q |
343 |
aatgcaaaaatacta |
357 |
Q |
| |
|
||||||||||||||| |
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| T |
788 |
aatgcaaaaatacta |
774 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 130 - 357
Target Start/End: Original strand, 14316016 - 14316243
Alignment:
| Q |
130 |
tacacattctcattctttcaaatgtacaacataccataatcaccgtacttatatcgtactactact-gaaattacactaact---agaaattacaaatac |
225 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||| |||||| |||| |||||||| | ||||||||| || || | | | ||||| |
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| T |
14316016 |
tacacattctcagtctttcatatgtacaacataccataatcactgtacttgtatcctactactattagaaattacaaatacataaagtagtgaagaatac |
14316115 |
T |
|
| Q |
226 |
atttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactcttttcaatttcgtggcaat |
325 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||| | ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
14316116 |
atttaaaattattcac----tatagtaacaaaaccaaaccataacatagatcttctaatccttaacaaatcaaatgaactcttttcaatttcgtggcaat |
14316211 |
T |
|
| Q |
326 |
ggtttagagaaacccaaaatgcaaaaatacta |
357 |
Q |
| |
|
|||||| |||||||| |||||||||||||||| |
|
|
| T |
14316212 |
ggtttaaagaaaccctaaatgcaaaaatacta |
14316243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 355
Target Start/End: Original strand, 9884380 - 9884512
Alignment:
| Q |
220 |
aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactctttt-caatttcg |
318 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||||| ||||||||| |||| ||| |||||| ||||| || |||||||| ||||| ||||||| |
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| T |
9884380 |
aaatacatttcaaatcattcaccata----gcaacaaaatcaaaccatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttct |
9884475 |
T |
|
| Q |
319 |
tggcaatggtttagagaaacccaaaatgcaaaaatac |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9884476 |
cagcaatggtttagagaaacccaaaatgcaaaaatac |
9884512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 226
Target Start/End: Original strand, 1749 - 1915
Alignment:
| Q |
67 |
aattatagtttctcatcatttaaaattatgcttagg-gcaaaagcaaggacttgaagatattgata--------cacattctcattctttcaaatgtaca |
157 |
Q |
| |
|
||||| |||||||||| |||||||||| || ||||| ||||||||||||||||||| |||||| || ||||||||| ||| |||||||||| |
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| T |
1749 |
aattacagtttctcataatttaaaattctgattaggagcaaaagcaaggacttgaaaatattgttagtttgttacacattctcggtct--caaatgtaca |
1846 |
T |
|
| Q |
158 |
acataccataatcaccgtacttatatcgtactactactgaaattacactaactagaaattacaaataca |
226 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
1847 |
acataccataatcactatactcgtatcctactactattgtaattacactaactagaaattacaaataca |
1915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 1991 - 2023
Alignment:
| Q |
321 |
gcaatggtttagagaaacccaaaatgcaaaaat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1991 |
gcaatggtttagagaaacccaaaatgcaaaaat |
2023 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 284
Target Start/End: Original strand, 1956 - 1990
Alignment:
| Q |
250 |
gtaacaaaaccaaaccataacacaaatcgtctaat |
284 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
1956 |
gtaacaaaaccaaaccataacacagatcgtctaat |
1990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 1340 - 1251
Alignment:
| Q |
246 |
tatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactcttttcaatttcgtggcaatggtttagaga |
335 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||| |||| ||||| ||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
1340 |
tatagtaacaaaaccaaacaataacatagatcgtccaatcctaaacaaatcaaatgaaatcttctcaatttcgtggcaatggtttagaga |
1251 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 20421535 - 20421403
Alignment:
| Q |
220 |
aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactctttt-caatttcg |
318 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||||| ||||| ||| |||| ||| |||||| ||||| || |||||||| ||||| ||||||| |
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|
| T |
20421535 |
aaatacatttcaaatcattcaccata----gcaacaaaatcaaactatatcacagatcaactaatcctaaacaaaacaaatgaaacctttttcaatttct |
20421440 |
T |
|
| Q |
319 |
tggcaatggtttagagaaacccaaaatgcaaaaatac |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
20421439 |
cagcaatggtttagagaaacccaaaatgcaaaaatac |
20421403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 135368 - 135248
Alignment:
| Q |
220 |
aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactcttttcaatttcgt |
319 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||||| ||||||||| |||| ||| |||||| ||||| || ||||| ||| |||||||||| |
|
|
| T |
135368 |
aaatacatttcaaatcattcaccata----gcaacaaaatcaaaccatatcacagatcaactaatcctaaacaaaacaaattaacctttttcaatttgtc |
135273 |
T |
|
| Q |
320 |
ggcaatggtttagagaaacccaaaa |
344 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
135272 |
ggcaatggtttagagaaacccaaaa |
135248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 357
Target Start/End: Original strand, 36909893 - 36909998
Alignment:
| Q |
255 |
aaaaccaaaccataacacaaatcgtctaatcgta--aacgaatcaaatgaa-ctcttttcaatttcgtggcaatggtttagagaaacccaaaatgcaaaa |
351 |
Q |
| |
|
|||||||||||||| |||| ||| |||||| || ||| || |||||||| | |||||||||||| ||||||| ||||||| |||||||||||| |||| |
|
|
| T |
36909893 |
aaaaccaaaccatatcacagatcacctaatcctataaacaaaacaaatgaaacccttttcaatttcttggcaatagtttagaaaaacccaaaatgtaaaa |
36909992 |
T |
|
| Q |
352 |
atacta |
357 |
Q |
| |
|
|||||| |
|
|
| T |
36909993 |
atacta |
36909998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 344
Target Start/End: Complemental strand, 112193 - 112072
Alignment:
| Q |
220 |
aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaactctttt-caatttcg |
318 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||||| ||||||||| |||| ||| |||||| ||||| || ||||| || ||||| |||||| |
|
|
| T |
112193 |
aaatacatttcaaatcattcaccata----gcaacaaaatcaaaccatatcacatatcaactaatcctaaacaaaacaaattaaacctttttcaatttat |
112098 |
T |
|
| Q |
319 |
tggcaatggtttagagaaacccaaaa |
344 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
112097 |
cggcaatggtttagagaaacccaaaa |
112072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 15607325 - 15607193
Alignment:
| Q |
220 |
aaatacatttaaaattattcaccatatatagtaacaaaaccaaaccataacacaaatcgtctaatcgtaaacgaatcaaatgaa-ctcttttcaatttcg |
318 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||||| ||||||||| ||| ||| |||||| ||||| || |||||||| | ||||||||||| |
|
|
| T |
15607325 |
aaatacatttcaaatcattcaccata----gcaacaaaatcaaaccatattacagatcaactaatcctaaactaagcaaatgaaacatttttcaatttct |
15607230 |
T |
|
| Q |
319 |
tggcaatggtttagagaaacccaaaatgcaaaaatac |
355 |
Q |
| |
|
||||||| |||||||||| ||||||| | ||||||| |
|
|
| T |
15607229 |
tggcaataatttagagaaaaccaaaatacgaaaatac |
15607193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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