View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_low_40 (Length: 375)

Name: NF7636_low_40
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_low_40
NF7636_low_40
[»] chr4 (9 HSPs)
chr4 (276-328)||(45175511-45175563)
chr4 (10-164)||(45078021-45078172)
chr4 (10-164)||(45089343-45089494)
chr4 (19-78)||(44669005-44669064)
chr4 (19-78)||(44688281-44688340)
chr4 (112-159)||(44669104-44669151)
chr4 (112-159)||(44688380-44688427)
chr4 (19-76)||(45095774-45095831)
chr4 (111-159)||(45095863-45095911)
[»] chr8 (2 HSPs)
chr8 (103-164)||(24042188-24042249)
chr8 (111-160)||(42699947-42699996)
[»] chr2 (3 HSPs)
chr2 (103-156)||(24001890-24001943)
chr2 (28-88)||(20596485-20596545)
chr2 (28-88)||(20603968-20604028)
[»] chr1 (2 HSPs)
chr1 (25-76)||(42414523-42414574)
chr1 (112-156)||(44005194-44005238)
[»] chr7 (1 HSPs)
chr7 (32-76)||(41681800-41681844)
[»] chr5 (1 HSPs)
chr5 (325-357)||(33192458-33192490)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 45175563 - 45175511
Alignment:
Q  276 atcaagggttgaatgagttaaaaattatgaattcaaacttagatgagtgagta 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45175563 atcaagggttgaatgagttaaaaattatgaattcaaacttagatgagtgagta 45175511  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 45078021 - 45078172
Alignment:
Q  10 attattctgattttgcataactactagcaccttgtatctgtcattaactggatcatagccaaagccacggtatgt-gatcaattcacgacgacaaaaaca 108  Q
    |||||||  |||| ||| |||||| |||||||||||||||||||||||| ||||| |||||||||| |  ||||| ||  ||||    | ||  ||||||    
T  45078021 attattccaatttcgcacaactaccagcaccttgtatctgtcattaacttgatcaaagccaaagccgcaatatgtggaaaaatt----atgattaaaaca 45078116  T
Q  109 atcaatggttggagatgttttggattcatatttgatagaaggattccacaatctga 164  Q
      ||| | |||||||||||||||||||  | |||||||||||||||||||||||||    
T  45078117 tacaaagcttggagatgttttggattcgaagttgatagaaggattccacaatctga 45078172  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 45089343 - 45089494
Alignment:
Q  10 attattctgattttgcataactactagcaccttgtatctgtcattaactggatcatagccaaagccacggtatgt-gatcaattcacgacgacaaaaaca 108  Q
    |||||||  |||| ||| |||||| |||||||||||| ||||||||||| ||||| | ||||||||||| ||||| ||  ||||    | ||  ||||||    
T  45089343 attattccaatttcgcacaactaccagcaccttgtatatgtcattaacttgatcaaaaccaaagccacgatatgtggaaaaatt----atgattaaaaca 45089438  T
Q  109 atcaatggttggagatgttttggattcatatttgatagaaggattccacaatctga 164  Q
      ||| |||||||||||||||||||||  | ||||||||||| |||||||||||||    
T  45089439 tacaaaggttggagatgttttggattccaaattgatagaagggttccacaatctga 45089494  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 44669005 - 44669064
Alignment:
Q  19 attttgcataactactagcaccttgtatctgtcattaactggatcatagccaaagccacg 78  Q
    |||||||| |||| |||| |||||||| ||||| |||||| |||||||||||||||||||    
T  44669005 attttgcacaactgctaggaccttgtacctgtcgttaacttgatcatagccaaagccacg 44669064  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 44688281 - 44688340
Alignment:
Q  19 attttgcataactactagcaccttgtatctgtcattaactggatcatagccaaagccacg 78  Q
    |||||||| |||| |||| |||||||| ||||| |||||| |||||||||||||||||||    
T  44688281 attttgcacaactgctaggaccttgtacctgtcgttaacttgatcatagccaaagccacg 44688340  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 44669104 - 44669151
Alignment:
Q  112 aatggttggagatgttttggattcatatttgatagaaggattccacaa 159  Q
    |||||||||||||| ||||||||   ||||||||||||||||||||||    
T  44669104 aatggttggagatggtttggatttcaatttgatagaaggattccacaa 44669151  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 44688380 - 44688427
Alignment:
Q  112 aatggttggagatgttttggattcatatttgatagaaggattccacaa 159  Q
    |||||||||||||| ||||||||   ||||||||||||||||||||||    
T  44688380 aatggttggagatggtttggatttcaatttgatagaaggattccacaa 44688427  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 45095774 - 45095831
Alignment:
Q  19 attttgcataactactagcaccttgtatctgtcattaactggatcatagccaaagcca 76  Q
    |||||||| |||| || | |||||||| ||||| |||||| |||||||||||||||||    
T  45095774 attttgcacaactgctgggaccttgtacctgtcgttaacttgatcatagccaaagcca 45095831  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 45095863 - 45095911
Alignment:
Q  111 caatggttggagatgttttggattcatatttgatagaaggattccacaa 159  Q
    ||||||| ||||||| ||||||||   ||||||||||||||||||||||    
T  45095863 caatggtaggagatgatttggatttcaatttgatagaaggattccacaa 45095911  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 24042188 - 24042249
Alignment:
Q  103 aaaacaatcaatggttggagatgttttggattcatatttgatagaaggattccacaatctga 164  Q
    ||||||| |||||||||||||| ||||||||||  |||||| |||||||||||| |||||||    
T  24042188 aaaacaaacaatggttggagatcttttggattccaatttgagagaaggattccataatctga 24042249  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 42699996 - 42699947
Alignment:
Q  111 caatggttggagatgttttggattcatatttgatagaaggattccacaat 160  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||||    
T  42699996 caatggttggagatgttttggattccaaattgatagaaggattccacaat 42699947  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 24001943 - 24001890
Alignment:
Q  103 aaaacaatcaatggttggagatgttttggattcatatttgatagaaggattcca 156  Q
    ||||||| |||||||||||||| ||||||||||  |||||| ||||||||||||    
T  24001943 aaaacaaacaatggttggagatcttttggattccaatttgagagaaggattcca 24001890  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 20596485 - 20596545
Alignment:
Q  28 aactactagcaccttgtatctgtcattaactggatcatagccaaagccacggtatgtgatc 88  Q
    |||| ||||||||||||||| |||||| ||  ||||||||||||||||| | |||||||||    
T  20596485 aactgctagcaccttgtatcggtcattcacatgatcatagccaaagccatgatatgtgatc 20596545  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 20603968 - 20604028
Alignment:
Q  28 aactactagcaccttgtatctgtcattaactggatcatagccaaagccacggtatgtgatc 88  Q
    |||| ||||||||||||||| |||||| ||  ||||||||||||||||| | |||||||||    
T  20603968 aactgctagcaccttgtatcggtcattcacatgatcatagccaaagccatgatatgtgatc 20604028  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 42414574 - 42414523
Alignment:
Q  25 cataactactagcaccttgtatctgtcattaactggatcatagccaaagcca 76  Q
    ||||||||||||||| |||||  ||| |||||| ||||||||||||||||||    
T  42414574 cataactactagcactttgtacttgtgattaacaggatcatagccaaagcca 42414523  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 44005194 - 44005238
Alignment:
Q  112 aatggttggagatgttttggattcatatttgatagaaggattcca 156  Q
    |||||||||||||||||||||||   | |||||||||||||||||    
T  44005194 aatggttggagatgttttggatttcaaattgatagaaggattcca 44005238  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 41681800 - 41681844
Alignment:
Q  32 actagcaccttgtatctgtcattaactggatcatagccaaagcca 76  Q
    ||||||||||  || |||||||||||| |||||||||||||||||    
T  41681800 actagcacctcataactgtcattaacttgatcatagccaaagcca 41681844  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 357
Target Start/End: Original strand, 33192458 - 33192490
Alignment:
Q  325 agtaaatattattctaacatttttcattgaaaa 357  Q
    |||||||||||||||||||||| ||||||||||    
T  33192458 agtaaatattattctaacatttgtcattgaaaa 33192490  T

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