View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_low_41 (Length: 372)

Name: NF7636_low_41
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_low_41
NF7636_low_41
[»] chr8 (3 HSPs)
chr8 (1-354)||(43743801-43744154)
chr8 (1-290)||(43445734-43446023)
chr8 (294-354)||(43441264-43441324)
[»] chr5 (1 HSPs)
chr5 (5-353)||(28218904-28219252)
[»] chr7 (11 HSPs)
chr7 (1-348)||(3146258-3146605)
chr7 (8-354)||(8640535-8640882)
chr7 (7-354)||(8645865-8646212)
chr7 (143-347)||(8586678-8586885)
chr7 (143-341)||(8615710-8615911)
chr7 (84-188)||(13334278-13334382)
chr7 (139-233)||(8658469-8658563)
chr7 (128-233)||(1300564-1300669)
chr7 (278-350)||(6788501-6788573)
chr7 (7-290)||(17266985-17267268)
chr7 (7-113)||(6788738-6788844)
[»] chr6 (2 HSPs)
chr6 (83-350)||(28910363-28910633)
chr6 (151-354)||(12488636-12488838)
[»] chr1 (4 HSPs)
chr1 (49-290)||(15594087-15594328)
chr1 (6-166)||(34467623-34467783)
chr1 (128-290)||(4679508-4679670)
chr1 (6-221)||(29464970-29465185)
[»] chr2 (5 HSPs)
chr2 (128-235)||(16662952-16663059)
chr2 (7-114)||(43624637-43624744)
chr2 (246-354)||(43624440-43624548)
chr2 (148-290)||(16658497-16658636)
chr2 (307-350)||(16663134-16663177)
[»] chr4 (1 HSPs)
chr4 (6-240)||(30774351-30774585)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 43744154 - 43743801
Alignment:
Q  1 ttaattgtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatga 100  Q
    |||| |||||||||| |||| | ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  43744154 ttaactgtttctgcttatgacagatccagtggtagtatgaatgagattacaataactaataacaaagaaagattgtcatctcaagaaattgaagaaatga 43744055  T
Q  101 ttagagaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgc 200  Q
    |||| |||||||||| |||| |  ||||||||||||| ||| | ||||| |||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  43744054 ttagggaagctgaaggttaccgctttaaagatgagaaatttcttaggaaagccaatgtaatgaatgcattagatgaatgggtttacaagttgaggaatgc 43743955  T
Q  201 tctaaagaataaggatgttaaattaaagctctcttctcaagtaactgacaagatcaactctgcaattacaaaggccacaaatttgcttgacagtaaccag 300  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| |||  ||| |||    
T  43743954 tgtaaagaataaggatgttaaattaaagctttcttctcaagtaactgacaagatcatttctgcaattacaaagaccacaaatttgctcgacgataatcag 43743855  T
Q  301 cacggcgaaatagatgttcttgaaaatcatctgaaggagcttgagagtatattc 354  Q
    ||  | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  43743854 cagagtgaaatagatgttcttgaaaatcatctgaaggagcttgagagtgtattc 43743801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 43446023 - 43445734
Alignment:
Q  1 ttaattgtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatga 100  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||  ||||||| |||| |||||||| |||||||||||||||||||||    
T  43446023 ttaatagtttcggctaatgacaaatccactggtagtatgaatgggattacaataaaaaataacaaagaacgattgtcatctcaagaaattgaagaaatga 43445924  T
Q  101 ttagagaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtg-tttacaagttgaggaatg 199  Q
    |||||||||||||||||||| |  ||||| ||||||| ||| | |||||||||||||||||||||| ||||||||| || | |||||| |||||||||||    
T  43445923 ttagagaagctgaagattaccgctttaaa-atgagaaatttcttaggaaggccaatgtaatgaatgcattagatgaatgggttttacaggttgaggaatg 43445825  T
Q  200 ctctaaagaataaggatgttaaattaaagctctcttctcaagtaactgacaagatcaactctgcaattacaaaggccacaaatttgcttga 290  Q
     | |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  43445824 ttgtaaagaataaggatattaaattaaagctctcgtctaaagtaactgacaagatcaactatgcaattacaaagaccacaaatttgcttga 43445734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 43441324 - 43441264
Alignment:
Q  294 taaccagcacggcgaaatagatgttcttgaaaatcatctgaaggagcttgagagtatattc 354  Q
    |||||||||  | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  43441324 taaccagcaaagtgaaatagatgttcttgaaaatcatctgaaggagcttgagagtgtattc 43441264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 353
Target Start/End: Complemental strand, 28219252 - 28218904
Alignment:
Q  5 ttgtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattag 104  Q
    ||||||||||| |||||||||||||||||| |||||| | |||| |||||||||||| || ||||||||| ||  ||||||||||| |||||||||||||    
T  28219252 ttgtttctgcttatgaaaaatccactggtattatgaaggagattgcaataactaatagcaaagaaagattatcttctcaagaaattaaagaaatgattag 28219153  T
Q  105 agaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctcta 204  Q
     ||||||||||||||| || |||||||||| || ||| |||||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||||||    
T  28219152 ggaagctgaagattaccgttttaaagatgaaaaatttctaaggaaggccaatgtcatgaatgcattagatgactgcgtttacaagttgaggaatgctcta 28219053  T
Q  205 aagaataaggatgttaaattaaagctctcttctcaagtaactgacaagatcaactctgcaattacaaaggccacaaatttgcttgacagtaaccagcacg 304  Q
    |||||||||||| ||| |||| |||| |||||| ||  || ||||||||||||||||| |||||| ||||| |||||||| | ||| | ||||||| |      
T  28219052 aagaataaggatattagattacagctgtcttctaaaaaaattgacaagatcaactctgaaattacgaaggcaacaaatttccatgatactaaccagaaga 28218953  T
Q  305 gcgaaatagatgttcttgaaaatcatctgaaggagcttgagagtatatt 353  Q
    | |||||| ||||||||||||||||||||||||||||  ||||||||||    
T  28218952 gtgaaatacatgttcttgaaaatcatctgaaggagctcaagagtatatt 28218904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 3146605 - 3146258
Alignment:
Q  1 ttaattgtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatga 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||| ||||||||||||| | |||||||||  | ||||||    
T  3146605 ttaattgtttctgctaatgaaaaatccactggtagtacgaatgagattacagtaactaatgacaaagaaagattgtcatcccaagaaattataaaaatga 3146506  T
Q  101 ttagagaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgc 200  Q
    | | |||||||||| ||||| ||||| | ||||| || ||| |||||||||||||||||||||||| ||||||| |||||||||||||| |||  |||||    
T  3146505 tcaaagaagctgaaaattaccgtgttgaggatgaaaaatttctaaggaaggccaatgtaatgaatgcattagattattgtgtttacaagatgaaaaatgc 3146406  T
Q  201 tctaaagaataaggatgttaaattaaagctctcttctcaagtaactgacaagatcaactctgcaattacaaaggccacaaatttgcttgacagtaaccag 300  Q
    | ||||||| |||||||| ||  |||| ||||| ||||||| || |||||||||||| |||||||| ||||||||||||| ||| ||||| |||| ||||    
T  3146405 tttaaagaagaaggatgtgaatataaatctctcctctcaagaaaatgacaagatcaattctgcaatcacaaaggccacaagtttacttgatagtacccag 3146306  T
Q  301 cacggcgaaatagatgttcttgaaaatcatctgaaggagcttgagagt 348  Q
    ||  | ||||||||||||||||||||||| ||||||||||||||||||    
T  3146305 cagagtgaaatagatgttcttgaaaatcacctgaaggagcttgagagt 3146258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 354
Target Start/End: Original strand, 8640535 - 8640882
Alignment:
Q  8 tttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattagaga 107  Q
    ||||||||| |||||| || ||||||| || || || |||| ||||||||||| | | ||||||||||||| ||||| ||||| ||||||||| ||||||    
T  8640535 tttctgctagtgaaaagtctactggtaataggactgagattccaataactaatgataaagaaagattgtcatctcaacaaattaaagaaatgactagaga 8640634  T
Q  108 agctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaag 207  Q
     |||||| ||||| || || ||| |||||| ||  |||||||||||||| ||||||||||||||||  ||||  |||||||| ||| |||||||||||||    
T  8640635 cgctgaaaattaccgtattgaagctgagaaattcctaaggaaggccaatttaatgaatggattagactattgcatttacaagatgaagaatgctctaaag 8640734  T
Q  208 aataaggatgttaaattaaagctctcttctc-aagtaactgacaagatcaactctgcaattacaaaggccacaaatttgcttgacagtaaccagcacggc 306  Q
    ||||||||| ||||| ||||||||||||||| ||| || ||||||||||||   | ||||||| ||||||||||||||||||||| || || | ||  |     
T  8640735 aataaggatattaaactaaagctctcttctcaaagaaaatgacaagatcaatcatacaattacgaaggccacaaatttgcttgactgtgacaaacaaagt 8640834  T
Q  307 gaaatagatgttcttgaaaatcatctgaaggagcttgagagtatattc 354  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  8640835 gaaatatatgttctggaaaatcatctgaaggagcttgagagtatattc 8640882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 7 - 354
Target Start/End: Complemental strand, 8646212 - 8645865
Alignment:
Q  7 gtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattagag 106  Q
    |||||||| | ||||||||| ||||||| || || || |||| ||||||||||| | | ||||||||||||  ||||| ||||| ||||||||| |||||    
T  8646212 gtttctgcgagtgaaaaatctactggtaataggactgagattccaataactaatgaaaaagaaagattgtcgtctcaacaaattaaagaaatgactagag 8646113  T
Q  107 aagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaa 206  Q
    |||||||| ||||| || || |||||||||| ||  |||||||||||||||||||||||||||||||  ||||  |||| ||| ||| ||| ||||||||    
T  8646112 aagctgaaaattaccgtattgaagatgagaaattcctaaggaaggccaatgtaatgaatggattagaccattgcatttataagctgaagaaagctctaaa 8646013  T
Q  207 gaataaggatgttaaattaaagctctcttctcaagtaactgacaagatcaactctgcaattacaaaggccacaaatttgcttgacagtaaccagcacggc 306  Q
    ||  ||||||||||||||||| ||||| ||| ||| || ||||||||||||   ||||||||| |||||||||||| ||||||||||| |  | ||  |     
T  8646012 gaggaaggatgttaaattaaatctctcatctaaagaaaatgacaagatcaataatgcaattacgaaggccacaaatctgcttgacagtgataaacaaagt 8645913  T
Q  307 gaaatagatgttcttgaaaatcatctgaaggagcttgagagtatattc 354  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||||||    
T  8645912 gaaattgatgttctggaaaatcatctgaaggagcttgatagtatattc 8645865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 347
Target Start/End: Original strand, 8586678 - 8586885
Alignment:
Q  143 taaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaagctctcttctcaagt 242  Q
    |||||||||| || |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||  ||||||||||      
T  8586678 taaggaaggctaaggtaatgaattcattagatgattgtgtttacaagttaaggaatgctctaaagaataaggatattaaactaaagtgctcttctcaaaa 8586777  T
Q  243 aactgacaagatcaactctgcaattacaaaggccacaaatttgcttg---acagtaaccagcacggcgaaatagatgttcttgaaaatcatctgaaggag 339  Q
    |  | | ||||||||   ||||||||||| ||| |||||||||||||   | | ||||||| |    || |||||||||||||   ||||||||||||||    
T  8586778 agttaaaaagatcaatcatgcaattacaatggctacaaatttgcttgataagaataaccaggagaatgacatagatgttcttgtggatcatctgaaggag 8586877  T
Q  340 cttgagag 347  Q
    ||||||||    
T  8586878 cttgagag 8586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 341
Target Start/End: Complemental strand, 8615911 - 8615710
Alignment:
Q  143 taaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaagctctcttctcaagt 242  Q
    ||||||||||||| |||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||   |||||||| || ||||||      
T  8615911 taaggaaggccaaggtaatgaatgaattagatgactgcatttacaagttgaggaatgctctaaagaataaggatgttgctttaaagctatcatctcaaaa 8615812  T
Q  243 aactgacaagatcaactctgcaattacaaaggccacaaatttgcttgacag---taaccagcacggcgaaatagatgttcttgaaaatcatctgaaggag 339  Q
    |  ||| || ||||||  |||||||||   ||| |||||||||||||| ||   |||||||||  | ||| |||| ||||| ||| ||||||||||||||    
T  8615811 agttgaaaatatcaacaatgcaattactgtggctacaaatttgcttgataggaataaccagcagagtgaagtagaagttctcgaagatcatctgaaggag 8615712  T
Q  340 ct 341  Q
    ||    
T  8615711 ct 8615710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 13334278 - 13334382
Alignment:
Q  84 agaaattgaagaaatgattagagaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtt 183  Q
    |||||||||| ||||||||| ||||||| | || |||  |||  ||||| |||| || |||||||||||||| |||||||||| |||||||  |||||||    
T  13334278 agaaattgaaaaaatgattaaagaagctaaggaataccatgtcgaagataagaaattcttaaggaaggccaaggtaatgaatgcattagattcttgtgtt 13334377  T
Q  184 tacaa 188  Q
    |||||    
T  13334378 tacaa 13334382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 8658563 - 8658469
Alignment:
Q  139 tttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaagctctc 233  Q
    ||||||||||||||||| ||||||||||  || ||| |||||||||||||  ||| ||||||  |||| || ||||||||||| ||||| |||||    
T  8658563 tttttaaggaaggccaaagtaatgaatgatttggattattgtgtttacaaagtgaagaatgcgttaaaaaagaaggatgttaatttaaacctctc 8658469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 1300669 - 1300564
Alignment:
Q  128 aagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaa 227  Q
    ||||| |||| ||||||| ||||||||  ||||||||||  || ||| |||||||||||||  ||| ||||||  ||||||| ||||||||||| |||||    
T  1300669 aagataagaagtttttaaagaaggccacagtaatgaatgatttggattattgtgtttacaaagtgaagaatgccttaaagaagaaggatgttaatttaaa 1300570  T
Q  228 gctctc 233  Q
     |||||    
T  1300569 tctctc 1300564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 6788573 - 6788501
Alignment:
Q  278 caaatttgcttgacagtaaccagcacggcgaaatagatgttcttgaaaatcatctgaaggagcttgagagtat 350  Q
    ||||||||||||| |||||||| || |  ||||| ||||||||||||  ||||||||| ||||||||||||||    
T  6788573 caaatttgcttgatagtaaccaacaggttgaaattgatgttcttgaaggtcatctgaaagagcttgagagtat 6788501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 17267268 - 17266985
Alignment:
Q  7 gtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattagag 106  Q
    ||||||||||  || |||||||||||||||| ||||| |||||||||||| ||| ||| || ||| || ||  || || ||||| ||  | || ||| ||    
T  17267268 gtttctgctatggacaaatccactggtagtaagaatgagattacaataaccaatgacaaaggaaggttatcggctgaacaaattaaaagattggttaaag 17267169  T
Q  107 aagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaa 206  Q
    ||||||| |  |||| | |  | ||| |||| || ||||| ||||| || |||||||||| | | || || ||||||||||| |||   ||||   | ||    
T  17267168 aagctgaggcgtactctatcgatgataagaaattcttaagaaaggcaaaagtaatgaatgcactggacgactgtgtttacaaattggaaaatgtgttgaa 17267069  T
Q  207 gaataaggatgttaaattaaagctctcttctcaagtaactgacaagatcaactctgcaattacaaaggccacaaatttgcttga 290  Q
    ||| || ||| |||| ||||||||||||||  ||| ||   | ||||||||  ||||||||| |||||||||||| ||||||||    
T  17267068 gaagaaagatattaatttaaagctctcttcaaaagaaaacaagaagatcaatgctgcaattaaaaaggccacaaaattgcttga 17266985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 6788844 - 6788738
Alignment:
Q  7 gtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattagag 106  Q
    |||||||||| |||||||||||| || | |||||||| |||||| ||||| ||| ||| |||||| ||||  | | | |||||| || || |||||| ||    
T  6788844 gtttctgctactgaaaaatccacgggcaatatgaatgagattaccataaccaattacaaagaaaggttgtgtagtgacgaaattaaaaaattgattaaag 6788745  T
Q  107 aagctga 113  Q
    |||||||    
T  6788744 aagctga 6788738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 83 - 350
Target Start/End: Complemental strand, 28910633 - 28910363
Alignment:
Q  83 aagaaattgaagaaatgattagagaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgt 182  Q
    |||||||| |||||||||| | |||||||||  |||||  |||  ||||||| || ||| |||| ||||||||||||||||||| |||| || |||||||    
T  28910633 aagaaattcaagaaatgatcaaagaagctgagaattaccatgtagaagatgaaaaatttctaagaaaggccaatgtaatgaatgcattacattattgtgt 28910534  T
Q  183 ttacaagttgaggaatgctctaaagaataaggatgttaaattaaagctctcttctcaagtaactgacaagatcaactctgcaattacaaaggccacaaat 282  Q
    ||||||| ||| ||||| | |||| || ||||||  |||  |||||||||| ||||||| || ||||||||| ||||||||||||| ||||| |||||||    
T  28910533 ttacaagatgaagaatgatttaaacaagaaggatactaatctaaagctctcctctcaagaaaatgacaagattaactctgcaattaaaaaggacacaaat 28910434  T
Q  283 ttgcttga---cagtaaccagcacggcgaaatagatgttcttgaaaatcatctgaaggagcttgagagtat 350  Q
    ||||||||    |||||||||||  | ||||||||| |||||||||||||||||||||| ||||| |||||    
T  28910433 ttgcttgaaattagtaaccagcagagtgaaatagatattcttgaaaatcatctgaaggatcttgaaagtat 28910363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 151 - 354
Target Start/End: Original strand, 12488636 - 12488838
Alignment:
Q  151 gccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaagctctcttctcaagtaactgaca 250  Q
    |||||| ||||||||||||||||  ||||  |||||||| ||| ||||||||||||||  ||||||||||||||||||||||| ||| ||| || ||| |    
T  12488636 gccaatttaatgaatggattagactattgcatttacaagatgaagaatgctctaaagaggaaggatgttaaattaaagctctcatctaaagaaaatgata 12488735  T
Q  251 agatcaactctgcaattacaaaggccacaaatttgcttgacagtaaccagcacggcgaaatagatgttcttgaaaatcatctgaaggagcttgagagtat 350  Q
    |||||||   ||| ||||| ||||||||||||||| |||| ||| |  | ||  | |||||| ||||||| ||||||||| |||||||||||||||||||    
T  12488736 agatcaatcatgcgattacgaaggccacaaatttg-ttgatagtgaaaaacaaagtgaaatacatgttctggaaaatcatttgaaggagcttgagagtat 12488834  T
Q  351 attc 354  Q
    ||||    
T  12488835 attc 12488838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 290
Target Start/End: Complemental strand, 15594328 - 15594087
Alignment:
Q  49 acaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattagagaagctgaagattactgtgttaaagatgagaattttttaagga 148  Q
    |||||||| ||| ||| |||||| |||||| |  | |||||| || ||||||||  |||||| || || ||  ||| | |||||||||| ||  ||||||    
T  15594328 acaataaccaatgacaaagaaaggttgtcagcatatgaaattaaaaaaatgattcaagaagccgaggaatatcgtgctgaagatgagaaattcctaagga 15594229  T
Q  149 aggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaagctctcttctcaagtaactga 248  Q
    ||||  | |||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||| ||| || | |    
T  15594228 aggcggaggtaatgaatgcattagatgactgtgtttacaagttgagaaatgctctgaagaataaggatgtcaaattaaaactctcttctaaag-aagtta 15594130  T
Q  249 c-aagatcaactctgcaattacaaaggccacaaatttgcttga 290  Q
    | ||||||||   ||||||||||  ||| ||||||||||||||    
T  15594129 caaagatcaatggtgcaattacagtggctacaaatttgcttga 15594087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 34467623 - 34467783
Alignment:
Q  6 tgtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattaga 105  Q
    |||||||||||| ||||||    |||||| || ||||  |||||||||||| ||| ||| || ||| ||||| ||  |||||||||||||||||||| ||    
T  34467623 tgtttctgctaaggaaaaacggtctggtactaagaataagattacaataaccaatgacaaaggaaggttgtcgacaaaagaaattgaagaaatgattcga 34467722  T
Q  106 gaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatg 166  Q
    |||||||| |||||| ||||| ||||| |||| || |||||||||||| |  |||||||||    
T  34467723 gaagctgaggattaccgtgttgaagataagaaattcttaaggaaggccgagttaatgaatg 34467783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 128 - 290
Target Start/End: Original strand, 4679508 - 4679670
Alignment:
Q  128 aagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaa 227  Q
    ||||| |||| |||||||||||||| || ||||||| || ||| ||   ||||||||||||  | | ||||||| ||||||| ||||||||||| |||||    
T  4679508 aagataagaaatttttaaggaaggctaaggtaatgagtgcattggaattttgtgtttacaatatcaagaatgctttaaagaagaaggatgttaatttaaa 4679607  T
Q  228 gctctcttctcaagtaactgacaagatcaactctgcaattacaaaggccacaaatttgcttga 290  Q
    |||||||| | | | || ||| |||||||||  ||||||||||  |||||| || ||||||||    
T  4679608 gctctcttgtgatgaaagtgaaaagatcaacgatgcaattacagtggccaccaacttgcttga 4679670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 29465185 - 29464970
Alignment:
Q  6 tgtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattaga 105  Q
    |||| ||||||| |||| ||| ||||  | |||||||| ||| || || ||||||  || |||||| || |||||   |||||||||| ||||||||| |    
T  29465185 tgttactgctaaggaaatatctactgacaatatgaatgtgatcaccattactaatggcaaagaaaggttatcaacgttagaaattgaaaaaatgattaaa 29465086  T
Q  106 gaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaa 205  Q
    ||||||||  | |||  |||  |||||  | | ||  ||||||||||||||||||||| || |||||||  ||||||||||||  ||| |||| |  |||    
T  29465085 gaagctgagaaataccatgtggaagatatgcaattcgtaaggaaggccaatgtaatgagtgcattagattcttgtgtttacaatatgaagaatacattaa 29464986  T
Q  206 agaataaggatgttaa 221  Q
    |||| |||| ||||||    
T  29464985 agaagaaggttgttaa 29464970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 16662952 - 16663059
Alignment:
Q  128 aagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaa 227  Q
    |||||||||| ||  ||||||||||||| |||||||||| ||||||||| ||  ||||||| |||||||||||||||||||||||| |||| ||||||||    
T  16662952 aagatgagaaattcctaaggaaggccaaggtaatgaatgcattagatgactgcatttacaaattgaggaatgctctaaagaataagaatgtcaaattaaa 16663051  T
Q  228 gctctctt 235  Q
    ||| ||||    
T  16663052 gctttctt 16663059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 43624744 - 43624637
Alignment:
Q  7 gtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattagag 106  Q
    ||||||||||| |||||||||||||||| || ||||| ||||||||| || ||  ||| || |||||||||| ||||||||||| || | ||||||||||    
T  43624744 gtttctgctaaagaaaaatccactggtaataggaatgagattacaattaccaaggacaaaggaagattgtcatctcaagaaattaaaaacatgattagag 43624645  T
Q  107 aagctgaa 114  Q
    ||||||||    
T  43624644 aagctgaa 43624637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 43624548 - 43624440
Alignment:
Q  246 tgacaagatcaactctgcaattacaaaggccacaaatttgcttgacagtaaccagcacggcgaaatagatgttcttgaaaatcatctgaaggagcttgag 345  Q
    ||||||||||||   |||||||||||||||||||||||||||||||| ||| ||| |  |  |||  |||||||| || |||||||| ||||||||||||    
T  43624548 tgacaagatcaataatgcaattacaaaggccacaaatttgcttgacactaatcaggagagtaaaacggatgttctcgagaatcatcttaaggagcttgag 43624449  T
Q  346 agtatattc 354  Q
    |||||||||    
T  43624448 agtatattc 43624440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 290
Target Start/End: Original strand, 16658497 - 16658636
Alignment:
Q  148 aaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaaagaataaggatgttaaattaaagctctcttctcaagtaactg 247  Q
    |||||||| |||||||||| ||| ||| |||||||||||||  ||| ||||||| |||||   || ||||| || ||||||||||| ||||||| || ||    
T  16658497 aaggccaaggtaatgaatgcattggattattgtgtttacaatatgaagaatgctttaaag---aaagatgtgaatttaaagctctcctctcaagaaattg 16658593  T
Q  248 acaagatcaactctgcaattacaaaggccacaaatttgcttga 290  Q
    | |||||||||  |||||||||   |||||||| |||||||||    
T  16658594 agaagatcaacaatgcaattactgtggccacaagtttgcttga 16658636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 350
Target Start/End: Original strand, 16663134 - 16663177
Alignment:
Q  307 gaaatagatgttcttgaaaatcatctgaaggagcttgagagtat 350  Q
    ||| |||||||||||||  |||||||||||||||||||||||||    
T  16663134 gaagtagatgttcttgaggatcatctgaaggagcttgagagtat 16663177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 240
Target Start/End: Complemental strand, 30774585 - 30774351
Alignment:
Q  6 tgtttctgctaatgaaaaatccactggtagtatgaatgggattacaataactaataacagagaaagattgtcaactcaagaaattgaagaaatgattaga 105  Q
    |||||||||||  |||||||||||||| | |||||||| ||| || ||||| ||  ||| |||||| || || |   |||||||| |  ||||||||  |    
T  30774585 tgtttctgctatggaaaaatccactggcaatatgaatgagatcacgataaccaacgacaaagaaaggttatccagagaagaaattaacaaaatgattcaa 30774486  T
Q  106 gaagctgaagattactgtgttaaagatgagaattttttaaggaaggccaatgtaatgaatggattagatgattgtgtttacaagttgaggaatgctctaa 205  Q
    ||||||  ||| ||| ||| | |||||||||| ||  |||||||| | |  |||||||||| |||||||   ||  |||||||||||||||||| |||||    
T  30774485 gaagctagagagtaccgtgctgaagatgagaaattcctaaggaagtctatggtaatgaatgcattagattgctgcatttacaagttgaggaatggtctaa 30774386  T
Q  206 agaataaggatgttaaattaaagctctcttctcaa 240  Q
    ||| |||||| || || |||||||| || ||||||    
T  30774385 agattaaggacgtaaatttaaagctatcatctcaa 30774351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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