View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_43 (Length: 366)
Name: NF7636_low_43
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 34302308 - 34302115
Alignment:
| Q |
19 |
gtgttccctattatcccagagaaatattggattgataccatagaagcttacaaatgtgtgaaatcacatctaaagaaggttgagattaagggcttcaagg |
118 |
Q |
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| T |
34302308 |
gtgttccccattattccagaaaaatattggattgatactatagaagcttacaaatgtgtgaaatcacatctaaagaaggtcgagattacgggcttcaaga |
34302209 |
T |
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| Q |
119 |
gaactagaaatgagcttagtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagcatcaatttacttaaagatgacgtgaa |
212 |
Q |
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| T |
34302208 |
gaactaaaaatgagctttgtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagtatcaatttacttaaaggtgacgtgaa |
34302115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 28 - 201
Target Start/End: Complemental strand, 34281222 - 34281047
Alignment:
| Q |
28 |
attatcccagagaaatattggattgata---ccatagaagcttacaaatgtgtgaaatcacatctaaagaaggttgagattaagggcttcaagggaacta |
124 |
Q |
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||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
34281222 |
attattccagaaaaatattggattgataatactatagaagcttacaaatgtgtgaaatcacatctaaagaaggtcgagattacgggcttcaagggaacta |
34281123 |
T |
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| Q |
125 |
gaaatgagcttagtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagcatcaatttacttaaa |
201 |
Q |
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| T |
34281122 |
gaaatgagcttaatg-gattacttacttcctcattcgtgaggagaccttaaggaagatgagcattaatttacttaaa |
34281047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 34289687 - 34289591
Alignment:
| Q |
220 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
316 |
Q |
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| T |
34289687 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34289591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 34289826 - 34289718
Alignment:
| Q |
114 |
caagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggagacgttaagaaagatgagcatcaatttacttaaagatgacgtgaaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34289826 |
caagggaactagaaatgagcttagtgtgattacttacttcctccttcgtggggaggccttaagaaagatgagcatcaatttacttaaagatgacatgaaa |
34289727 |
T |
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| Q |
214 |
gaagaggct |
222 |
Q |
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| T |
34289726 |
gaagaggct |
34289718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 34296818 - 34296717
Alignment:
| Q |
17 |
cagtgttccctattatcccagagaaatattggattgataccatagaagcttacaaatgtgtgaaatcacatctaaagaaggttgagattaagggcttcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34296818 |
cagtgttccctattatcccagagaaatattggattgatactatagaagcttacaaatgtgtgaaatcacatctaaaaaaggttgagattaagggcttcaa |
34296719 |
T |
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| Q |
117 |
gg |
118 |
Q |
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|| |
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| T |
34296718 |
gg |
34296717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 34302074 - 34301978
Alignment:
| Q |
220 |
gctagatctttgctgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34302074 |
gctagatctttactgacaattccaaaagcttcaactaatttggagttattgatatgttaatgaacctttgaaagtgttgtgtttgtttgaaacaagg |
34301978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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