View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7636_low_45 (Length: 359)

Name: NF7636_low_45
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7636_low_45
NF7636_low_45
[»] chr3 (7 HSPs)
chr3 (16-359)||(28899358-28899701)
chr3 (19-303)||(28913707-28914003)
chr3 (20-154)||(28932018-28932152)
chr3 (19-171)||(28923128-28923276)
chr3 (31-173)||(28889409-28889550)
chr3 (193-263)||(28889584-28889654)
chr3 (180-249)||(28923299-28923368)


Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 28899358 - 28899701
Alignment:
Q  16 gttgtaacaatgccatctcccttgagatccactgccatataaagagaaagggaaagacaaatatcagtaacaaaatattatagatcagaggttctttaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28899358 gttgtaacaatgccatctcccttgagatccactgccatataaagagaaagggaaagacaaatatcagtaacaaaatattatagatcagaggttcttttat 28899457  T
Q  116 actcttaaggaagcagaaatgttcaataatgttaataagtcacagacaaatgaactatcgaattgataacatgagggcagattttaaattttcagtttga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28899458 actcttaaggaagcagaaatgttcaataatgttaataagtcacagacaaatgaactatcgaattgataacatgagggcagattttaaattttcagtttga 28899557  T
Q  216 tttatagatttacagcctcctggcacatgctcaaataaatttcacaattatgtgaatgtaaattctatgcatgtatagtaagttttttgtaagttgaaaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28899558 tttatagatttacagcctcctggcacatgctcaaataaatttcacaattatgtgaatgtaaattctatgcatgtatagtaagttttttgtaagttgaaaa 28899657  T
Q  316 tagtaagagagccttttctcttgttgaatttcatgattaatagc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28899658 tagtaagagagccttttctcttgttgaatttcatgattaatagc 28899701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 28913707 - 28914003
Alignment:
Q  19 gtaacaatgccatctcccttgagatccactgccatataaag-agaaagggaaagacaaatatcagtaacaaaatattatagatcagaggttctttaatac 117  Q
    |||||||| | |||||||||||||||||||||||||||| | ||||| |   |||||||||||||||||||||||| |||||||||||||||||| ||||    
T  28913707 gtaacaattctatctcccttgagatccactgccatataacgcagaaaag---agacaaatatcagtaacaaaatatgatagatcagaggttcttttatac 28913803  T
Q  118 tcttaaggaagcagaaatgttcaataatgttaataagtcacagacaaatgaactatcga--------------attgataacatgagggcagattttaaa 203  Q
    ||  ||| || ||||||||||||||||||||||||||    ||||||||||||||| |               |  |||||| | | || ||||| | ||    
T  28913804 tccaaagcaaacagaaatgttcaataatgttaataagcattagacaaatgaactattggggataaaggatgggagggataacttaaaggaagattcttaa 28913903  T
Q  204 ttttcagtttgatttatagatttacagcctcctggcacatgctcaaataaatttcacaattatgtgaatgtaaattctatgcatgtatagtaagtttttt 303  Q
    ||| ||||||| ||| ||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  28913904 tttccagtttgttttgtagatttactgcctcctggcacattctcaagtaaatatcacaattatgtgaatgtaaattctatgcatgtataataattttttt 28914003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 28932018 - 28932152
Alignment:
Q  20 taacaatgccatctcccttgagatccactgccatataaagagaaagggaaagacaaatatcagtaacaaaatattatagatcagaggttctttaatactc 119  Q
    |||||| || ||||||||||||||||||||||||||||||   ||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||      
T  28932018 taacaacgcaatctcccttgagatccactgccatataaagcagaagagaaagaccaatatcagtaacaaaatatgatagatcagaggttcttttatacca 28932117  T
Q  120 ttaaggaagcagaaatgttcaataatgttaataag 154  Q
    | ||| ||||||||||| ||||| |||||||||||    
T  28932118 taaagaaagcagaaatgctcaatgatgttaataag 28932152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 28923128 - 28923276
Alignment:
Q  19 gtaacaatgccatctcccttgagatccactgccatataaagagaaagggaaagacaaatatcagtaacaaaatattatagatcagaggttctttaatact 118  Q
    |||||||| | ||||||||||||||||||||||||||||||   |||    |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  28923128 gtaacaattctatctcccttgagatccactgccatataaagcagaag----agacaaatatcagtaacaaaatatgatagatcagaggttcttttatact 28923223  T
Q  119 cttaaggaagcagaaatgttcaataatgttaataagtcacagacaaatgaact 171  Q
    |  ||| || ||||||||||| ||||||||||||||    |||||||||||||    
T  28923224 ccaaagcaaacagaaatgttctataatgttaataagcattagacaaatgaact 28923276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 28889409 - 28889550
Alignment:
Q  31 tctcccttgagatccactgccatataaag-agaaagggaaagacaaatatcagtaacaaaatattatagatcagaggttctttaatactcttaaggaagc 129  Q
    ||||||||||||||||||||||| ||||| ||||   || |||||||||| ||| ||||||||| |||||||| | ||||||| ||||||| |||||| |    
T  28889409 tctcccttgagatccactgccatgtaaagtagaa---gagagacaaatattagttacaaaatatgatagatcatatgttcttttatactctaaaggaatc 28889505  T
Q  130 agaaatgttcaataatgttaataagtca-cagacaaatgaactat 173  Q
    ||||||| ||||| ||||||||||| ||  |||||||||||||||    
T  28889506 agaaatggtcaatgatgttaataagccattagacaaatgaactat 28889550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 28889584 - 28889654
Alignment:
Q  193 cagattttaaattttcagtttgatttatagatttacagcctcctggcacatgctcaaataaatttcacaat 263  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| |||   || || |||||||||||||    
T  28889584 cagattttaaattttcagtttgttttatagatttactgcctcctgacacgcacttaagtaaatttcacaat 28889654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 28923299 - 28923368
Alignment:
Q  180 gataacatgagggcagattttaaattttcagtttgatttatagatttacagcctcctggcacatgctcaa 249  Q
    |||||| | |||| ||||| | ||||| ||||||| ||| ||||||||| |||||||||||||| |||||    
T  28923299 gataacttaagggaagattcttaatttccagtttgttttgtagatttaccgcctcctggcacattctcaa 28923368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University