View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7636_low_46 (Length: 356)
Name: NF7636_low_46
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_46 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 35808821 - 35808477
Alignment:
| Q |
1 |
caaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgtgaattctttggcttatgaagctgatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35808821 |
caaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgtgaattctttggcttatgaagctgatgca |
35808722 |
T |
|
| Q |
101 |
aggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaacatgatcttgccattgcaaaggatcgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35808721 |
aggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaacatgatcttgccattgcaaaggatcgcc |
35808622 |
T |
|
| Q |
201 |
tggctcgttgcgctgcggctgctgctactcctacttcttctttttccaatgatatgatgaattcaaatgttagtttgccaccttttcctgagtttttcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35808621 |
tggctcgttgcgctgcggctgctgctactcctacttcttctttttccaatgatatgatgaattcaaatgttagtttgccaccttttcctgagtttttcac |
35808522 |
T |
|
| Q |
301 |
ttgcagtgacttcagtgataatttaagtcacagttcttcatctca |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35808521 |
ttgcagtgacttcagtgataatttaagtcacagttcttcgtctca |
35808477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 32036454 - 32036245
Alignment:
| Q |
1 |
caaagtatttggagcaagcaatgtgagcaagattctgattgaagttccagaggaacaaagggaagaaactgtgaattctttggcttatgaagctgatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||| ||||| || ||||||||| | |||||||||||||| ||| |
|
|
| T |
32036454 |
caaagtatttggagcaagcaatgttagcaagatactcattgaagtgccagaaaaacaaagagaagacacagtgaattctcttgcttatgaagctgaagca |
32036355 |
T |
|
| Q |
101 |
aggcttagagaccctgtctatggatgcataggtgctatagcacttttgcaaaggaagatggttgaacttcaacatgatcttgccattgcaaaggatcgtc |
200 |
Q |
| |
|
|||||||||||||| || || |||||||| ||| | ||||| | ||||||||||||||| | |||||||| |||||| | |||||||| ||||| |||| |
|
|
| T |
32036354 |
aggcttagagacccagtttacggatgcattggttccatagctatgttgcaaaggaagatgatggaacttcagcatgatttggccattgctaaggaacgtc |
32036255 |
T |
|
| Q |
201 |
tggctcgttg |
210 |
Q |
| |
|
| |||||||| |
|
|
| T |
32036254 |
ttgctcgttg |
32036245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University