View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7636_low_50 (Length: 328)
Name: NF7636_low_50
Description: NF7636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7636_low_50 |
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| [»] scaffold0290 (1 HSPs) |
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| [»] scaffold0042 (2 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 13599571 - 13599744
Alignment:
| Q |
18 |
agtaaccgtttaagacctcaatcatcatcaaacatgcctggccatttgatgagctttaattgaattttttcccaagttattatctatggagagggaggac |
117 |
Q |
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| T |
13599571 |
agtaaccgtttaagacctcaatcattatcaaacatgcctggccatttgatgagctttaattgaattttttcccaagttattatctatggagagggaggac |
13599670 |
T |
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| Q |
118 |
tcggctgagagagtaaaagggagaaaagtcagatttcaagcttgctttatggattagggttgcacaagaatact |
191 |
Q |
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| T |
13599671 |
tcggctgagagagtaaaagggagaaaagtcagatttcaagcttgctttatggattagggttgcacaagaatact |
13599744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 220 - 324
Target Start/End: Original strand, 13599988 - 13600092
Alignment:
| Q |
220 |
tttaagcgggatgttacactctaccatccttaaagaaatttcgtcctcgaaatttagaattttcttaaaaaccattgcggttaaggcttgacatctttgt |
319 |
Q |
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|||||||||||||||||| |||||| |||||| ||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||||||| |
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| T |
13599988 |
tttaagcgggatgttacagtctaccctccttatagaaatttcgtcctcaaaatttagaatttccgtaaaaaccattgcggttaacgcttgacatctttgt |
13600087 |
T |
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| Q |
320 |
ttctt |
324 |
Q |
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||||| |
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| T |
13600088 |
ttctt |
13600092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 2442 - 2392
Alignment:
| Q |
227 |
gggatgttacactctaccatccttaaagaaatttcgtcctcgaaatttaga |
277 |
Q |
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| T |
2442 |
gggatattacactctaccccccttaaagaaatttcgtcctcgaaatttaga |
2392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 21314540 - 21314490
Alignment:
| Q |
227 |
gggatgttacactctaccatccttaaagaaatttcgtcctcgaaatttaga |
277 |
Q |
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||||| |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
21314540 |
gggatattacactctacccccattaaagaaatttcgtcctcgaaatttaga |
21314490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 21334327 - 21334277
Alignment:
| Q |
227 |
gggatgttacactctaccatccttaaagaaatttcgtcctcgaaatttaga |
277 |
Q |
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||||| |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
21334327 |
gggatattacactctacccccattaaagaaatttcgtcctcgaaatttaga |
21334277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 15560110 - 15560055
Alignment:
| Q |
224 |
agcgggatgttacactctaccatccttaaagaaatttcgtcctcgaaatttagaatt |
280 |
Q |
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| T |
15560110 |
agcgggatgttacactctaccgcccttaaa-aaattttgtcctcgaaatttagaatt |
15560055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 4137 - 4066
Alignment:
| Q |
227 |
gggatgttacactctaccatccttaaagaaatttcgtcctcgaaatttagaattttcttaaaaaccattgcg |
298 |
Q |
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| T |
4137 |
gggatattacactctaccccccttaaagaaatttcgtcctcaaaatttagagattacttaacaaccactgcg |
4066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 8412 - 8353
Alignment:
| Q |
220 |
tttaagcgggatgttacactctaccatccttaaa-gaaatttcgtcctcgaaatttagaa |
278 |
Q |
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|||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
8412 |
tttaagcgggatattacactctacctcccttaaaagaaatttcgtcctcgaaagttagaa |
8353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 15825 - 15766
Alignment:
| Q |
220 |
tttaagcgggatgttacactctaccatcctt-aaagaaatttcgtcctcgaaatttagaa |
278 |
Q |
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|||||||||||| |||||||||||| |||| |||||||||||| |||||||| |||||| |
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| T |
15825 |
tttaagcgggatattacactctacctcccttaaaagaaatttcgccctcgaaagttagaa |
15766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 16094 - 16142
Alignment:
| Q |
227 |
gggatgttacactctaccatccttaaagaaatttcgtcctcgaaattta |
275 |
Q |
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|||||||||||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
16094 |
gggatgttacactctacccccctcaaagaaatttcatcctcgaaattta |
16142 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 14823615 - 14823567
Alignment:
| Q |
227 |
gggatgttacactctaccatccttaaagaaatttcgtcctcgaaattta |
275 |
Q |
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|||||||||||||||||| ||| ||||||||||| ||||||||||||| |
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| T |
14823615 |
gggatgttacactctacccccctcaaagaaatttcatcctcgaaattta |
14823567 |
T |
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